Skip to main content

Templated Assembly of DNA Origami Gold Nanoparticle Arrays on Lithographically Patterned Surfaces

  • Protocol
  • First Online:
DNA Nanotechnology

Part of the book series: Methods in Molecular Biology ((MIMB,volume 749))

Abstract

Artificial DNA nanostructures such as DNA origami have garnered significant interest as templates for sub-20 nm lithography because their rational design allows for the incorporation of binding sites to assemble nanocomponents with 6 nm resolution. In addition, their overall size of 100 nm is easily accessible by top-down lithographic methods. Combining the strengths of top-down lithography and bottom-up self-assembly using DNA nanostructures may provide a commercially viable route to fabricating electronic and photonic devices with nanometer-scale features. We have demonstrated just such a comprehensive process in which 5 nm gold nanoparticles are first assembled in high yield on DNA origami. The constructs are then organized, rinsed, and dried on patterned silicon substrates, yielding large area arrays of both origami and nanoparticles.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Seeman, N. C. (2003) DNA in a material world Nature 421, 427–431.

    Google Scholar 

  2. Whitesides, G. M., Grzybowski, B. (2002) Self-assembly at all scales Science 295, 2418–2421.

    Google Scholar 

  3. Rothemund, P. W. K. (2006) Folding DNA to create nanoscale shapes and patterns Nature 440, 297–302.

    Article  CAS  Google Scholar 

  4. Aldaye, F. A., Palmer, A. L., Sleiman, H. F. (2008) Assembling materials with DNA as the guide Science 321, 1795–1799.

    Google Scholar 

  5. Lin, C. X., Liu, Y., Rinker, S., Yan, H. (2006) DNA tile based self-assembly: Building complex nanoarchitectures Chemphyschem 7, 1641–1647.

    Google Scholar 

  6. Hung, A. M., Micheel, C. M., Bozano, L. D., Osterbur, L. W., Wallraff, G. M., Cha, J. N. (2010) Large area spatially ordered arrays of gold nanoparticles directed by lithographically confined DNA origami Nature Nano­technology, 5, 121–126.

    Google Scholar 

  7. Pastre, D., Hamon, L., Landousy, F., Sorel, I., David, M. O., Zozime, A., Le Cam, E., Pietrement, O. (2006) Anionic polyelectrolyte adsorption on mica mediated by multivalent cations: A solution to DNA imaging by atomic force microscopy under high ionic strengths Langmuir 22, 6651–6660.

    Google Scholar 

  8. Kershner, R. J., Bozano, L. D., Micheel, C. M., Hung, A. M., Fornof, A. R., Cha, J. N., Rettner, C. T., Bersani, M., Frommer, J., Rothemund, P. W. K., Wallraff, G. M. (2009) Placement and orientation of individual DNA shapes on lithographically patterned surfaces Nature Nanotechnology 4, 557–561.

    Google Scholar 

  9. Zanchet, D., Micheel, C. M., Parak, W. J., Gerion, D., Alivisatos, A. P. (2001) Electrophoretic isolation of discrete Au nanocrystal/DNA conjugates Nano Letters 1, 32–35.

    Google Scholar 

  10. Demers, L. M., Mirkin, C. A., Mucic, R. C., Reynolds, R. A., Letsinger, R. L., Elghanian, R., Viswanadham, G. (2000) A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles Analytical Chemistry 72, 5535–5541.

    Google Scholar 

  11. Hansma, H. G., Bezanilla, M., Zenhausern, F., Adrian, M., Sinsheimer, R. L. (1993) Atomic Force Microscopy of DNA in Aqueous-Solutions Nucleic Acids Research 21, 505–512.

    Google Scholar 

Download references

Acknowledgments

The authors thank Luisa Bozano for providing the lithographically patterned substrates and Christine M. Micheel for helping to develop the methods for binding nanoparticles to DNA origami. This work was financially supported by the Center on Polymer Interfaces and Macromolecular Assemblies (Award Number: NSF DMR 0213618), the Office of Naval Research (Award Number: N00014-09-01-0250), and UCSD startup funds.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jennifer N. Cha .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Hung, A.M., Cha, J.N. (2011). Templated Assembly of DNA Origami Gold Nanoparticle Arrays on Lithographically Patterned Surfaces. In: Zuccheri, G., Samorì, B. (eds) DNA Nanotechnology. Methods in Molecular Biology, vol 749. Humana Press. https://doi.org/10.1007/978-1-61779-142-0_13

Download citation

  • DOI: https://doi.org/10.1007/978-1-61779-142-0_13

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-141-3

  • Online ISBN: 978-1-61779-142-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics