Abstract
With the recent discovery of small interfering RNA (siRNA), to silence the expression of genes in vitro and in vivo, there has been a need to deliver these molecules to the cell nucleus. Forming a lipid/nucleic acid complex has become a solution and is explored here. Certain methods and ideas are used, such as: the positive/negative electrostatic interaction with a cationic lipid and an anionic RNA molecule, the size of the lipid vesicle aiding the uptake target tissues, targeted lipoplexes which can increase efficiency, and the protection of the siRNA molecule from the natural defenses of the immune system. Many lipid formulations exist and can be experimented with to achieve varying results depending on the application.
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References
Hannon GJ (2002) RNA interference. Nature 418(6894):244–251
Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391(6669):806–811
Ruiz F, Vayssie L, Klotz C, Sperling L, Madeddu L (1998) Homology-dependent gene silencing in Paramecium. Mol Biol Cell 9(4):931–943
Hammond SM, Bernstein E, Beach D, Hannon GJ (2000) An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404(6775):293–296
Elbashir SM, Lendeckel W, Tuschl T (2001) RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev 15(2):188–200
Hamilton AJ, Baulcombe DC (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286(5441):950–952
Zamore PD, Tuschl T, Sharp PA, Bartel DP (2000) RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101(1):25–33
Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409(6818):363–366
Martinez J, Patkaniowska A, Urlaub H, Luhrmann R, Tuschl T (2002) Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell 110(5):563–574
Hammond SM, Boettcher S, Caudy AA, Kobayashi R, Hannon GJ (2001) Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293(5532):1146–1150
Xia H, Mao Q, Paulson HL, Davidson BL (2002) siRNA-mediated gene silencing in vitro and in vivo. Nat Biotechnol 20(10):1006–1010
Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T (2001) Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411(6836):494–498
Brown D, Jarvis R, Pallotta V, Byrom M, Ford L (2002) RNA interference in mammalian cell culture: design, execution and analysis of the siRNA effect. Ambion TechNotes 9(1):3–5
Jorgensen R (1990) Altered gene expression in plants due to trans interactions between homologous genes. Trends Biotechnol 8(12):340–344
Heidel JD, Hu S, Liu XF, Triche TJ, Davis ME (2004) Lack of interferon response in animals to naked siRNAs. Nat Biotechnol 22(12):1579–1582
Khan A, Benboubetra M, Sayyed PZ, Ng KW, Fox S, Beck G, Benter IF, Akhtar S (2004) Sustained polymeric delivery of gene silencing antisense ODNs, siRNA, DNAzymes and ribozymes: in vitro and in vivo studies. J Drug Target 12(6):393–404
Kamath RS, Martinez-Campos M, Zipperlen P, Fraser AG, Ahringer J (2001) Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans. Genome Biol 2(1):RESEARCH0002
Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, Zamore PD (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell 115(2):199–208
Gilmore IR, Fox SP, Hollins AJ, Sohail M, Akhtar S (2004) The design and exogenous delivery of siRNA for post-transcriptional gene silencing. J Drug Target 12(6):315–340
Grunweller A, Gillen C, Erdmann VA, Kurreck J (2003) Cellular uptake and localization of a Cy3-labeled siRNA specific for the serine/threonine kinase Pim-1. Oligonucleotides 13(5):345–352
Kawasaki H, Miyagishi M, Taira K (2003) Development of siRNA libraries by in vitro dicing and optimized efficient expression vectors for siRNAs in mammalian cells. Tanpakushitsu Kakusan Koso 48(Suppl 11):1638–1645
Brummelkamp TR, Bernards R, Agami R (2002) A system for stable expression of short interfering RNAs in mammalian cells. Science 296(5567):550–553
Xu Y, Linde A, Larsson O, Thormeyer D, Elmen J, Wahlestedt C, Liang Z (2004) Functional comparison of single- and double-stranded siRNAs in mammalian cells. Biochem Biophys Res Commun 316(3):680–687
Morrissey DV, Lockridge JA, Shaw L, Blanchard K, Jensen K, Breen W, Hartsough K, Machemer L, Radka S, Jadhav V et al (2005) Potent and persistent in vivo anti-HBV activity of chemically modified siRNAs. Nat Biotechnol 23(8):1002–1007
Schwarz DS, Hutvagner G, Haley B, Zamore PD (2002) Evidence that siRNAs function as guides, not primers, in the Drosophila and human RNAi pathways. Mol Cell 10(3):537–548
Harborth J, Elbashir SM, Vandenburgh K, Manninga H, Scaringe SA, Weber K, Tuschl T (2003) Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing. Antisense Nucleic Acid Drug Dev 13(2):83–105
Chiu YL, Rana TM (2003) siRNA function in RNAi: a chemical modification analysis. RNA 9(9):1034–1048
Czauderna F, Fechtner M, Dames S, Aygun H, Klippel A, Pronk GJ, Giese K, Kaufmann J (2003) Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells. Nucleic Acids Res 31(11):2705–2716
Hall AH, Wan J, Shaughnessy EE, Ramsay SB, Alexander KA (2004) RNA interference using boranophosphate siRNAs: structure-activity relationships. Nucleic Acids Res 32(20):5991–6000
Amarzguioui M, Holen T, Babaie E, Prydz H (2003) Tolerance for mutations and chemical modifications in a siRNA. Nucleic Acids Res 31(2):589–595
Chen D, Texada DE, Duggan C, Liang C, Reden TB, Kooragayala LM, Langford MP (2005) Surface calreticulin mediates muramyl dipeptide-induced apoptosis in RK13 cells. J Biol Chem 280(23):22425–22436
Rose SD, Kim DH, Amarzguioui M, Heidel JD, Collingwood MA, Davis ME, Rossi JJ, Behlke MA (2005) Functional polarity is introduced by Dicer processing of short substrate RNAs. Nucleic Acids Res 33(13):4140–4156
Lorenz C, Hadwiger P, John M, Vornlocher HP, Unverzagt C (2004) Steroid and lipid conjugates of siRNAs to enhance cellular uptake and gene silencing in liver cells. Bioorg Med Chem Lett 14(19):4975–4977
Soutschek J, Akinc A, Bramlage B, Charisse K, Constien R, Donoghue M, Elbashir S, Geick A, Hadwiger P, Harborth J et al (2004) Therapeutic silencing of an endogenous gene by systemic administration of modified siRNAs. Nature 432(7014):173–178
Liao H, Wang JH (2005) Biomembrane-permeable and ribonuclease-resistant siRNA with enhanced activity. Oligonucleotides 15(3):196–205
Basyuk E, Suavet F, Doglio A, Bordonne R, Bertrand E (2003) Human let-7 stem-loop precursors harbor features of RNase III cleavage products. Nucleic Acids Res 31(22):6593–6597
Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Radmark O, Kim S et al (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425(6956):415–419
Siolas D, Lerner C, Burchard J, Ge W, Linsley PS, Paddison PJ, Hannon GJ, Cleary MA (2005) Synthetic shRNAs as potent RNAi triggers. Nat Biotechnol 23(2):227–231
Brummelkamp TR, Bernards R, Agami R (2002) Stable suppression of tumorigenicity by virus-mediated RNA interference. Cancer Cell 2(3):243–247
Urban-Klein B, Werth S, Abuharbeid S, Czubayko F, Aigner A (2005) RNAi-mediated gene-targeting through systemic application of polyethylenimine (PEI)-complexed siRNA in vivo. Gene Ther 12(5):461–466
Ge Q, Filip L, Bai A, Nguyen T, Eisen HN, Chen J (2004) Inhibition of influenza virus production in virus-infected mice by RNA interference. Proc Natl Acad Sci USA 101(23):8676–8681
Kim B, Tang Q, Biswas PS, Xu J, Schiffelers RM, Xie FY, Ansari AM, Scaria PV, Woodle MC, Lu P et al (2004) Inhibition of ocular angiogenesis by siRNA targeting vascular endothelial growth factor pathway genes: therapeutic strategy for herpetic stromal keratitis. Am J Pathol 165(6):2177–2185
Wilson JA, Jayasena S, Khvorova A, Sabatinos S, Rodrigue-Gervais IG, Arya S, Sarangi F, Harris-Brandts M, Beaulieu S, Richardson CD (2003) RNA interference blocks gene expression and RNA synthesis from hepatitis C replicons propagated in human liver cells. Proc Natl Acad Sci USA 100(5):2783–2788
Daan JA, Hennink WE, Storm G (2002) Drug targeting system: fundamentals and applications to parenteral drug delivery In: Hillery AM, Lloyd AW, Swarbrick J (eds) Drug delivery and targeting for pharÂmacists and pharmaceutical scientists. Routledge, UK
Hillery AM, Lloyd AW, Swarbrick J (2002) Drug delivery and targeting for pharmacists and pharmaceutical scientists. Taylor & Francis, London, pp 118–143
Daan JA, Hennink WE, Storm G (2002) Drug targeting system: fundamentals and applications to parenteral drug delivery In: Lloyd AW, Hillery AM, Swarbrick J (eds) drug delivery and targeting for pharmacists and pharmaceutical scientists. Routledge, UK
Bailey AL, Cullis PR (1997) Membrane fusion with cationic liposomes: effects of target membrane lipid composition. Biochemistry 36:1628–1634
Bailey A, Sullivan S (2000) Efficient encapsulation of DNA plasmids in small neutral liposomes induced by ethanol and calcium. Biochim Biophys Acta 1–2:239–252
Sims RPA, Larose JAG (1962) Use of iodine vapor as a general detecting agent in thin layer chromatography. J Am Oil Chem Soc 39:232
Magotoshi M, Samir SA, Noriaki T (1983) Size and permeability of liposomes extruded through polycarbonate membranes. Int J Pharm 17:215–224
Preeti SA, Wei W, Fuxing T, King MA, Meyer EM, Hughes JA (2001) Transgene delivery with a cationic lipid in the presence of amyloid β (βAP) peptide. Neurochem Res 23(3):195–202
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Hughes, J., Yadava, P., Mesaros, R. (2010). Liposomal siRNA Delivery. In: Weissig, V. (eds) Liposomes. Methods in Molecular Biology, vol 605. Humana Press. https://doi.org/10.1007/978-1-60327-360-2_31
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DOI: https://doi.org/10.1007/978-1-60327-360-2_31
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