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Genomic Outlier Detection in High-Throughput Data Analysis

  • Debashis GhoshEmail author
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 972)

Abstract

In the analysis of high-throughput data, a very common goal is the detection of genes or of differential expression between two groups or classes. A recent finding from the scientific literature in prostate cancer demonstrates that by searching for a different pattern of differential expression, new candidate oncogenes might be found. In this chapter, we discuss the statistical problem, termed oncogene outlier detection, and discuss a variety of proposals to this problem. A statistical model in the multiclass situation is described; links with multiple testing concepts are established. Some new nonparametric procedures are described and compared to existing methods using simulation studies.

Key words

cDNA microarrays Cancer Differential Expression Multiple Comparisons Rank-based statistic 

Notes

Acknowledgments

The author would like to acknowledge the support of the Huck Institutes of Life Sciences at Penn State University and NIH Grant R01GM72007.

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Copyright information

© Springer Science+Business Media New York 2013

Authors and Affiliations

  1. 1.Departments of Statistics and Public Health SciencesPenn State UniversityDuBiosUSA

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