Advertisement

Affinity Chromatography of Phosphorylated Proteins

Protocol
Part of the Methods in Molecular Biology™ book series (MIMB, volume 421)

Summary

This chapter covers the use of immobilized metal ion affinity chromatography (IMAC) for enrichment of phosphorylated proteins. Some requirements for successful enrichment of these types of proteins are discussed. An experimental protocol and a set of application data are included to enable the scientist to obtain high-yield results in a very short time with pre-packed phospho-specific metal ion affinity resin (PMAC).

Key Words

Phosphorylated proteins immobilized metal ion affinity chromatography ferric protein purification 

References

  1. 1.
    Karr, D.B. and Emerich, D.W. (1989) Protein phosphorylation in Bradyrhizobium japonicum bacteroids and cultures. J. Bacteriol. 171(6), 3420–3426.PubMedGoogle Scholar
  2. 2.
    Bourret, R.B., Hess J.F., Borkovich, K.A., Pakula, A.A., and Simon, M.I. (1989) Protein phosphorylation in chemotaxis and two-component regulatory systems of bacteria. J. Biol. Chem. 264(13), 7085–7088.PubMedGoogle Scholar
  3. 3.
    Kennelly, P.J. and Potts, M. (1996) Fancy meeting you here! A fresh look at “prokaryotic” protein phosphorylation. J. Bacteriol. 178(16), 4759–4764.PubMedGoogle Scholar
  4. 4.
    Klumpp, S. and Krieglstein, J. (2002) Phosphorylation and dephosphorylation of histidine residues in proteins. Eur. J. Biochem. 269(4), 1067–1071.CrossRefPubMedGoogle Scholar
  5. 5.
    Eichler, J. and Adams, M.W.W. (2005) Posttranslational protein modification in archaea. Microbiol. Mol. Biol. Rev. 69(3), 393–425.CrossRefPubMedGoogle Scholar
  6. 6.
    Ficarro, S.B., et al. (2003) Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation. J. Biol. Chem. 278(13), 11579–11589.CrossRefPubMedGoogle Scholar
  7. 7.
    Ficarro, S.B., et al. (2002) Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20(3), 301–305.CrossRefPubMedGoogle Scholar
  8. 8.
    Matthews, H.R. (1995) Protein kinases and phosphatases that act on histidine, lysine, or arginine residues in eukaryotic proteins: a possible regulator of the mitogen-activated protein kinase cascade. Pharmacol. Ther. 67(3), 323–350.CrossRefPubMedGoogle Scholar
  9. 9.
    Porath, J., Carlsson, J., Olsson, I., and Belfrage, G. (1975) Metal chelate affinity chromatography, a new approach to protein fractionation. Nature 258, 598–599.CrossRefPubMedGoogle Scholar
  10. 10.
    Pearson, R.G. (ed.) (1973) Hard and Soft Acids and Bases. Stroudsburg, PA: Hutchington 8 Ross; 53–85.Google Scholar
  11. 11.
    Andersson, L. and Porath, J. (1986) Isolation of phosphoproteins by Immobilized Metal (Fe3+) Affinity Chromatography. Anal. Biochem. 154, 250–254.CrossRefPubMedGoogle Scholar
  12. 12.
    Muszynska, G., Andersson, L., and Porath, J. (1986) Selective adsorption of phosphoproteins on gel-immobilized ferric chelate. Biochemistry 25, 6850–6853.CrossRefPubMedGoogle Scholar
  13. 13.
    Merryfield, M.L., Kramp, D.C., and Lardy, H.A. (1982) Purification and characterization of a rat liver ferroactivator with catalase activity. J. Biol. Chem. 257(8), 4646–4654.PubMedGoogle Scholar
  14. 14.
    van Heusden, M.C., Fogarty, S., Porath, J., and Law, J.H. (1991) Purification of insect vitellogenin and vitellin by gel-immobilized ferric chelate. Protein Expr. Purif. 2, 24–28.CrossRefPubMedGoogle Scholar
  15. 15.
    Kucerova, Z. (1989) Fractionation of human gastric proteinases by immobilized metal chelate (iron(3+)) affinity chromatography. J. Chromatogr. A 489(2), 390–393.Google Scholar
  16. 16.
    Vijayalakshmi, M.A. (1983) High performance liquid chromatography with immobilized metal adsorbents. In: Chaiken, I.M., Wilchek, M., and Parikh, I., eds. Affinity Chromatography and Biological Recognition. 1st ed. New York: Academic Press; 269–273.Google Scholar
  17. 17.
    Luong, C.B.H., Browner, M.F., Fletterick, R.J., and Haymore, B.L. (1992) Purification of glycogen phosphorylase isozymes by metal-affinity chromatography. J. Chromatogr. Biomed. Appl. 584(1), 77–84.CrossRefGoogle Scholar
  18. 18.
    Muszynska, G., Dobrowolska, G., Medin, A., Ekman, P., and Porath, J.O. (1992) Model studies on iron(III) ion affinity chromatography. II. Interaction of immobilized iron(III) ions with phosphorylated amino acids, peptides and proteins. J. Chromatogr. 604(1), 19–28.CrossRefPubMedGoogle Scholar
  19. 19.
    Neville D.C., Rozanas C.R., Price E.M., Gruis D.B., Verkman A.S., and Townsend R.R. (1997) Evidence for phosphorylation of serine 753 in CFTR using a novel metal-ion affinity resin and matrix-assisted laser desorption mass spectrometry. Protein Sci. 6(11), 2436–2445.CrossRefPubMedGoogle Scholar
  20. 20.
    Zachariou M., Traverso I., and Hearn M.T. (1993) High-performance liquid chromatography of amino acids, peptides and proteins. CXXXI. O-phosphoserine as a new chelating ligand for use with hard Lewis metal ions in the immobilized-metal affinity chromatography of proteins. J. Chromatogr. A 646(1), 107–120.CrossRefGoogle Scholar
  21. 21.
    Smilenov L., Forsberg E., Zeligman I., Sparrman M., and Johansson S. (1992) Separation of fibronectin from a plasma gelatinase using immobilized metal affinity chromatography. FEBS Lett. 302(3), 227–230.CrossRefPubMedGoogle Scholar
  22. 22.
    Bernos E., Girardet J.M., Humbert G., and Linden G. (1997) Role of the O-phosphoserine clusters in the interaction of the bovine milk alpha s1-, beta-, kappa-caseins and the PP3 component with immobilized iron (III) ions. Biochim. Biophys. Acta 1337(1), 149–159.CrossRefPubMedGoogle Scholar
  23. 23.
    Anguenot R., Yelle S., and Nguyen-Quoc B. (1999) Purification of tomato sucrose synthase phosphorylated isoforms by Fe(III)-immobilized metal affinity chromatography. Arch. Biochem. Biophys. 365(1), 163–169.CrossRefPubMedGoogle Scholar
  24. 24.
    Figeys D., Gygi S.P., Zhang Y., Watts J., Gu M., and Aebersold R. (1998) Electrophoresis combined with novel mass spectrometry techniques: powerful tools for the analysis of proteins and proteomes. Electrophoresis 19(10), 1811–1818.CrossRefPubMedGoogle Scholar
  25. 25.
    Lin J.H. and Chiang B.H. (1996) A modified procedure for caseinophosphopeptide analysis. J. Chromatogr. Sci. 34(8), 358–361.PubMedGoogle Scholar
  26. 26.
    Cao P. and Stults J.T. (1999) Phosphopeptide analysis by on-line immobilized metal-ion affinity chromatography-capillary electrophoresis-electrospray ionization mass spectrometry. J. Chromatogr. A 853(1), 225–235.CrossRefPubMedGoogle Scholar
  27. 27.
    Posewitz M.C. and Tempst P. (1999) Immobilized gallium (III) affinity chromatography of phosphopeptides. Anal. Chem. 71(14), 2883–2892.CrossRefPubMedGoogle Scholar
  28. 28.
    Barnouin K.N., Hart S.R., Thompson A.J., Okuyama M., Waterfield M., and Cramer R. (2005) Enhanced phosphopeptide isolation by Fe(III)-IMAC using 1,1,1,3,3,3-hexafluoroisopropanol. Proteomics 5(17), 4376–4388.CrossRefPubMedGoogle Scholar
  29. 29.
    Wang J., Zhang Y., Jiang H., Cai Y., and Qian X. (2006) Phosphopeptide detection using automated online IMAC-capillary LC-ESI-MS/MS. Proteomics 6(2), 404–11.CrossRefPubMedGoogle Scholar
  30. 30.
    Reinders J. and Sickmann A. (2005) State-of-the-art in phosphoproteomics. Proteomics 5(16), 4052–4061.CrossRefPubMedGoogle Scholar
  31. 31.
    Shuai K., Horvath C.M., Huang L.H., Qureshi S.A., Cowburn D., and Darnell J.E. Jr. (1994) Interferon activation of the transcription factor Stat91 involves dimerization through SH2-phosphotyrosyl peptide interactions. Cell 76(5), 821–828.CrossRefPubMedGoogle Scholar
  32. 32.
    Chen X., Vinkemeier U., Zhao Y., Jeruzalmi D., Darnell J.E. Jr., and Kuriyan J. (1998) Crystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA. Cell 93(5), 827–839.CrossRefPubMedGoogle Scholar

Copyright information

© Humana Press, a part of Springer Science+Business Media, LLC 2008

Authors and Affiliations

  1. 1.Clontech Laboratories, Inc.Mountain View

Personalised recommendations