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Classical Genetics

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Pichia Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 389))

Abstract

A significant advantage of Pichia pastoris as an experimental system is the ability to readily bring to bear both classical and molecular genetic approaches to a research problem. Although the advent of yeast molecular genetics has introduced new and exciting capabilities, classical genetics remains the approach of choice in many instances. These include the generation of mutations in previously unidentified genes (mutagenesis), the removal of unwanted secondary mutations (backcrossing), the assignment of mutations to specific genes (complementation analysis), and the construction of strains with new combinations of mutant alleles. This chapter describes these genetic manipulation methods for P. pastoris. In addition, certain yeast genes are essential for survival of the organism. However, determining whether a newly cloned gene is essential or not can be difficult with P. pastoris. In this chapter, we also describe a series of experiments to investigate the potential essential nature of a cloned gene in this yeast.

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References

  1. Cregg, J. M. (1987) Genetics of methylotrophic yeasts, in Proceedings of the Fifth International Symposium on Microbial Growth on C1 Compounds, (Duine, J. A. and Verseveld, H. W., eds.), Martinus Nijhoff Publishers, Dordrecht, The Netherlands, pp. 158–167.

    Google Scholar 

  2. Liu, H., Tan, X., Veenhuis, M., McCollum, D., and Cregg, J. M. (1992) An efficient screen for peroxisome-deficient mutants of Pichia pastoris. J. Bacteriol. 174, 4943–4951.

    CAS  PubMed  Google Scholar 

  3. Tolstorukov, I. I. and Benevolenskii, S. V. (1978) Study of the mechanism of mating and self-diploidization in haploid yeasts Pichia pinus: I. Bipolarity of mating. Genetika 14, 519–526.

    Google Scholar 

  4. Tolstorukov, I. I. and Benevolenskii, S. V. (1980) Study of the mechanism of mating and self-diploidization in haploid yeasts Pichia pinus: II. Mutations in the mating type locus. Genetika 16, 1335–1341.

    Google Scholar 

  5. Hicks, J. B. and Herskowitz, I. (1976) Interconversion of yeast mating types. I: Direct observation of the action of the homothalism (HO) gene. Genetics 83, 245–258.

    CAS  PubMed  Google Scholar 

  6. Boeke, J. D., Trueheart, J., Natsoulis, G., and Fink, G. R. (1987) 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 154, 164–175.

    Article  CAS  PubMed  Google Scholar 

  7. Krooth, R. S., Hsiao, W.-L., and Potvin, B. W. (1979) Resistance to 5-fluoroorotic acid and pyrimidine auxotrophy: a new bidirectional selective system for mammalian cells. Som. Cell Genet. 5, 551–569.

    Article  CAS  Google Scholar 

  8. Nett, J. H. and Gerngross, T. U. (2003) Cloning and disruption of the PpURA5 gene and construction of a set of integration vectors for the stable genetic modification of Pichia pastoris. Yeast 20, 1279–1290.

    Article  CAS  PubMed  Google Scholar 

  9. Thor, D., Xiong, S., Orazem, C. C., Kwan, A. C., Cregg, J. M., Lin-Cereghino, J., Lin-Cereghino, G. P. (2005) Cloning and characterization of the Pichia pastoris MET2 gene as a selectable marker. FEMS Yeast Res. 5, 935–942.

    Article  CAS  PubMed  Google Scholar 

  10. Gleeson, M. A. and Sudbery, P. E. (1988) Genetic analysis in the methylotrophic yeast Hansenula polymorpha. Yeast 4, 293–303.

    Article  CAS  Google Scholar 

  11. Rose, M. D., Winston, F., and Hieter, P. (1988) Methods in Yeast Genetics Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N. Y.

    Google Scholar 

  12. Spencer, J. F. T. and Spencer, D. M. (1988) Yeast genetics, in Yeast: A Practical Approach (Campbell, I. and Dufus, J. H. eds.) IRL Press, Oxford, England, pp. 65–106.

    Google Scholar 

  13. Sherman, F. (1991) Getting started with yeast. Methods Enzymol. 194, 3–21.

    Article  CAS  PubMed  Google Scholar 

  14. Tolstorukov, I. I., Dutova, T. A., Benevolensky, S. V., and Soom, Ya. O. (1977) Hybridization and genetic analysis of methanol-utilizing yeast Pichia pinus. Genetika 13, 322–329.

    CAS  Google Scholar 

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© 2007 Humana Press Inc., Totowa, NJ

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Tolstorukov, I., Cregg, J.M. (2007). Classical Genetics. In: Cregg, J.M. (eds) Pichia Protocols. Methods in Molecular Biology, vol 389. Humana Press. https://doi.org/10.1007/978-1-59745-456-8_14

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  • DOI: https://doi.org/10.1007/978-1-59745-456-8_14

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-429-6

  • Online ISBN: 978-1-59745-456-8

  • eBook Packages: Springer Protocols

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