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Spectral Karyotyping and Fluorescence In Situ Hybridization of Murine Cells

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Genetic Modification of Hematopoietic Stem Cells

Part of the book series: Methods In Molecular Biology™ ((MIMB,volume 506))

Summary

Cytogenetic characterization of murine chromosomes using banding techniques like R- or G-banding is technically demanding due to the similar size and the acrocentric structure of all chromosomes. The molecular cytogenetic technique of spectral karyotyping (SKY) overcomes that difficulty by karyotyping metaphase chromosomes after different and simultaneous fluorescence labeling of the whole genome. SKY allows the detection and identification of numerical as well as structural chromosome aberrations with a resolution of approximately 2 Mb. The technique is applicable to all fast-proliferating cells, e.g., cells of the hematopoietic system like stem cells or T- and B-lymphocytes. It is also applicable to murine embryonic fibroblast or cells isolated from tissues with increased proliferation—especially tumor tissues. Furthermore, SKY is recommended for the cytogenetic characterization of newly established cell lines.

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References

  1. Schrock, E., du Manoir, S., Veldman, T., Schoell, B., Wienberg, J., Ferguson-Smith, M.A., Ning, Y., Ledbetter, D.H., Bar-Am, I., Soenksen, D., Garini, Y., Ried, T. (1996) Multicolor spectral karyotyping of human chromosomes. Science 273, 494–497.

    Article  CAS  PubMed  Google Scholar 

  2. Liyanage, M., Coleman, A., du Manoir, S., Veldman, T., McCormack, S., Dickson, R.B., Barlow, C., Wynshaw-Boris, A., Janz, S., Wienberg, J., Ferguson-Smith, M.A., Schrock, E., Ried, T. (1996) Multicolour spectral karyotyping of mouse chromosomes. Nat Genet 14, 312–315.

    Article  CAS  PubMed  Google Scholar 

  3. Speicher, M.R., Gwyn Ballard, S., Ward, D.C. (1996) Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat Genet 12, 368–375.

    Article  CAS  PubMed  Google Scholar 

  4. Chudoba, I., Plesch, A., Lorch, T., Lemke, J., Claussen, U., Senger, G. (1999) High resolution multicolor-banding: a new technique for refined FISH analysis of human chromosomes. Cytogenet Cell Genet 84, 156–160.

    Article  CAS  PubMed  Google Scholar 

  5. Braig, M., Lee, S., Loddenkemper, C., Rudolph, C., Peters, A.H.F.M., Schlegel-berger, B., Stein, H., Dörken, B., Jenuwein, T., Schmitt, C.A. (2005) Inactivation of the Suv39h1 histone methyltransferase promotes Ras-driven lymphomagenesis by disabling cellular senescence. Nature 436, 660–665.

    Article  CAS  PubMed  Google Scholar 

  6. Li, Z., Dullmann, J., Schiedlmeier, B., Schmidt, M., von Kalle, C., Meyer, J., For-ster, M., Stocking, C., Wahlers, A., Frank, O., Ostertag, W., Kuhlcke, K., Eckert, H.G., Fehse, B., Baum, C. (2002) Murine leukemia induced by retroviral gene marking. Science 296, 497.

    Article  CAS  PubMed  Google Scholar 

  7. Modlich, U., Kustikova, O.S., Schmidt, M., Rudolph, C., Meyer, J., Li, Z., Kamino, K., von Neuhoff, N., Schlegelberger, B., Kuehl-cke, K., Bunting, K.D., Schmidt, S., Deich-mann, A., von Kalle, C., Fehse, B., Baum, C. (2005) Leukemias following retroviral transfer of multidrug resistance 1 (MDR1) are driven by combinatorial insertional mutagen-esis. Blood 105, 4235–4246.

    Article  CAS  PubMed  Google Scholar 

  8. Gaudet, F., Hodgson, J.G., Eden, A., Jackson-Grusby, L., Dausman, J., Gray, J.W., Leon-hardt, H., Jaenisch, R. (2003) Induction of tumors in mice by genomic hypomethylation. Science 300, 489–492.

    Article  CAS  PubMed  Google Scholar 

  9. Zhang, Y., Schlegelberger, B. (2002) Simultaneous fluorescence immunophenotyping and FISH on tumor cells. Methods Mol Biol 204, 379–390.

    CAS  PubMed  Google Scholar 

  10. Fiegler, H., Carr, P., Douglas, E.J., Burford, D.C., Hunt, S., Scott, C.E., Smith, J., Vetrie, D., Gorman, P., Tomlinson, I.P., Carter, N.P. (2003) DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones. Genes Chromosomes Cancer 36, 361–374.

    Article  CAS  PubMed  Google Scholar 

  11. Loja, T., Kuglik, P., Oltova, A., Smuharova, P., Zitterbart, K., Bajciova, V., Veselska, R. (2007) The optimization of sample treatment for spectral karyotyping with applications for human tumour cells. Cytogenet Genome Res 116, 186–193.

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

The authors wish to thank Michael Köhler (ASI GmbH, Germany) and Evelin Schröck for their support and guidance in SKY technology and Gillian Teicke for carefully reading the manuscript.

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© 2009 Humana Press

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Rudolph, C., Schlegelberger, B. (2009). Spectral Karyotyping and Fluorescence In Situ Hybridization of Murine Cells. In: Baum, C. (eds) Genetic Modification of Hematopoietic Stem Cells. Methods In Molecular Biology™, vol 506. Humana Press. https://doi.org/10.1007/978-1-59745-409-4_30

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  • DOI: https://doi.org/10.1007/978-1-59745-409-4_30

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-980-2

  • Online ISBN: 978-1-59745-409-4

  • eBook Packages: Springer Protocols

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