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Application of Proteomics to Posttransplantational Follow-Up

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Bone Marrow and Stem Cell Transplantation

Part of the book series: Methods in Molecular Medicine ((MIMM,volume 134))

Abstract

Proteomic screening of complex biological samples becomes of increasing importance in clinical research and diagnosis. It is expected that the meager number of approx 35,000 human genes gives rise to more than 1,000,000 functional entities at the protein level. Thus, the proteome provides a much richer source of information than the genome for describing the state of health or disease of the human organism. Especially, the composition body fluids comprise a rich source of information on possible changes in the status of health or disease of particular organs and in consequence of the whole organism. Here we describe the application of capillary electrophoresis (CE) coupled on-line to an electrospray-ionization (ESI)-time-of-flight (TOF)-mass spectrometer) to the analysis of human urine for the identification of biomarkers for complications after allogeneic hematopoietic stem cell transplantation.

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References

  1. Manabe, T. (1999) Capillary electrophoresis of proteins for proteomic studies. Electrophoresis 20, 3116–3121.

    Article  CAS  PubMed  Google Scholar 

  2. Oda, R. P., Clark, R., Katzmann, J. A., and Landers, J. P. (1997) Capillary electrophoresis as a clinical tool for the analysis of protein in serum and other body fluids. Electrophoresis 18, 1715–1723.

    Article  CAS  PubMed  Google Scholar 

  3. Jellum, E., Dollekamp, H., and Blessum, C. (1996) Capillary electrophoresis for clinical problem solving: analysis of urinary diagnostic metabolites and serum proteins. J. Chromatogr. Biomed. Appl. 683, 55–65.

    Article  CAS  Google Scholar 

  4. Neususs, C., Pelzing, M., and Macht, M. (2002) A robust approach for the analysis of peptides in the low femtomole range by capillary electrophoresis-tandem mass spectrometry. Electrophoresis 23, 3149–3159.

    Article  CAS  PubMed  Google Scholar 

  5. Moini, M. (2004) Capillary electrophoresis-electrospray ionization mass spectrometry of amino acids, peptides, and proteins, in Capillary Electrophoresis of Proteins and Peptides (Strege, M. A. and Lagu A. L., eds.). Humana, Totowa, NJ: pp. 253–290.

    Chapter  Google Scholar 

  6. Kaiser, T., Wittke, S., Krebs, R., Mischak, H., and Weissinger, E. M. (2004) Capillary Electrophoresis coupled to mass spectrometer for automated and robust polypetide recognition in body fluids for clinical use. Electrophoresis 25, 2044–2055

    Article  CAS  PubMed  Google Scholar 

  7. Kaiser T., Kamal H., Rank A., et al. (2004) Proteomics applied to clinical follow up of patients after allogeneic hematopoietic stem cell transplantation. Blood 104, 340–349.

    Article  CAS  PubMed  Google Scholar 

  8. Neuhoff, N., Kaiser, T., Wittke, S., et al. (2004) Mass spectrometry for the detection of differentially expressed proteins: a comparison of surface-enhanced laser desorption/ionization and capillary electrophoresis/mass spectrometry. Rapid Commun. Mass Spectrom. 18, 149–156.

    Article  CAS  PubMed  Google Scholar 

  9. Wittke, S., Mischak, H., Kolch, W., Raedler, T. J., and Wiedemann, K. (2005) Discovery of biomarkers in human urine and cerebrospinal fluid by capillary electrophoresis coupled mass spectrometry: towards new diagnostic and therapeutic approaches. Electrophoresis 26, 1476–1487.

    Article  CAS  PubMed  Google Scholar 

  10. Wittke, S., Fliser, D., Haubitz, M., et al. (2003) Determination of peptides and proteins in human urine with CE-MS—suitable tool for the establishment of new diagnostic markers. J. Chromatogr. A. 1013, 173–181.

    Article  CAS  PubMed  Google Scholar 

  11. Theodorescu, D., Fliser, D., Wittke, S., et al. (2005) Pilot study of capillary electrophoresis coupled to mass spectrometry as a tool to define potential prostate cancer biomarkers in urine. Electrophoresis 26, 2797–2808.

    Article  CAS  PubMed  Google Scholar 

  12. Johannesson, N., Wetterhall, M., Markides, K. E., and Bergquist, J. (2004) Monomer surface modifications for rapid peptide analysis by capillary electrophoresis and capillary electrochromatography coupled to electrospray ionization-mass spectrometry. Electrophoresis 25, 809–816.

    Article  CAS  PubMed  Google Scholar 

  13. Liu, C. Y. (2001) Stationary phases for capillary electrophoresis and capillary electrochromatography. Electrophoresis 22, 612–628.

    Article  CAS  PubMed  Google Scholar 

  14. Belder, D., Deege, A., Husmann, H., Kohler, F., and Ludwig, M. (2001) Cross-linked poly(vinylalcohol) as permanent hydrophilic column coating for capillary electrophoresis. Electrophoresis 22, 3813–3818.

    Article  CAS  PubMed  Google Scholar 

  15. Kolch, W., Neususs, C., Pelzing, M., and Mischak, H. (2005) Capillary electrophoresis—mass spectrometry as a powerful tool in clinical diagnosis and biomarker discovery. Mass Spectrometry Reviews 24, 959–977.

    Article  CAS  PubMed  Google Scholar 

  16. Ullsten, S., Zuberovic, A., Wetterhall, M., et al. (2004) A polyamine coating for enhanced capillary electrophoresis-electrospray ionization-mass spectrometry of proteins and peptides. Electrophoresis 25, 2090–2099.

    Article  CAS  PubMed  Google Scholar 

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© 2007 Humana Press Inc.

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Weissinger, E.M., Mischak, H. (2007). Application of Proteomics to Posttransplantational Follow-Up. In: Beksac, M. (eds) Bone Marrow and Stem Cell Transplantation. Methods in Molecular Medicine, vol 134. Humana Press. https://doi.org/10.1007/978-1-59745-223-6_15

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  • DOI: https://doi.org/10.1007/978-1-59745-223-6_15

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-595-8

  • Online ISBN: 978-1-59745-223-6

  • eBook Packages: Springer Protocols

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