Abstract
Host factors are crucial determinants of viral pathogenicity. Identifying host factors and their contributions to virus infections may lead to the development of novel antiviral strategies. The recently developed virus-induced gene silencing (VIGS) approach offers a rapid means to knock down expression of a given gene in plants. VIGS can be used to determine biological function of candidate genes or to discover new genes that play a role in a given biological pathway. Here, we describe genome-wide Tobacco rattle virus (TRV)-based VIGS screening methods to identify host factors involved in viral pathogenicity.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
1. Nelson, R. S., and Citovsky, V. (2005) Plant Physiol 138, 1809–1814.
2. Waigmann, E., Ueki, S., Trutnyeva, K., and Citovsky, V. (2004) Crit Rev Plant Sci 23, 195–250.
3. Whitham, S. A., and Wang, Y. (2004) Curr Opin Plant Biol 7, 365–371.
4. Ahlquist, P., Noueiry, A. O., Lee, W. M., Kushner, D. B., and Dye, B. T. (2003) J Virol 77, 8181–8186.
5. Kushner, D. B., Lindenbach, B. D., Grdzelishvili, V. Z., Noueiry, A. O., Paul, S. M., and Ahlquist, P. (2003) Proc Natl Acad Sci USA 100, 15764–15769.
6. Panavas, T., Serviene, E., Brasher, J., and Nagy, P. D. (2005) Proc Natl Acad Sci USA 102, 7326–7331.
7. Lellis, A. D., Kasschau, K. D., Whitham, S. A., and Carrington, J. C. (2002) Curr Biol 12, 1046–1051.
8. Tsujimoto, Y., Numaga, T., Ohshima, K., Yano, M. A., Ohsawa, R., Goto, D. B., Naito, S., and Ishikawa, M. (2003) EMBO J 22, 335–343.
9. Yamanaka, T., Ohta, T., Takahashi, M., Meshi, T., Schmidt, R., Dean, C., Naito, S., and Ishikawa, M. (2000) Proc Natl Acad Sci USA 97, 10107–10112.
10. Lartey, R. T., Ghoshroy, S., and Citovsky, V. (1998) Mol Plant Microbe Interact 11, 706–709.
11. Whitham, S. A., Anderberg, R. J., Chisholm, S. T., and Carrington, J. C. (2000) Plant Cell 12, 569–582.
12. Chisholm, S. T., Parra, M. A., Anderberg, R. J., and Carrington, J. C. (2001) Plant Physiol 127, 1667–1675.
13. Quadt, R., Kao, C. C., Browning, K. S., Hershberger, R. P., and Ahlquist, P. (1993) Proc Natl Acad Sci USA 90, 1498–1502.
14. Osman, T. A. M., and Buck, K. W. (1997) J Virol 71, 6075–6082.
15. Dorokhov, Y. L., Makinen, K., Frolova, O. Y., Merits, A., Saarinen, J., Kalkkinen, N., Atabekov, J. G., and Saarma, M. (1999) FEBS Lett 461, 223–228.
16. Kragler, F., Curin, M., Trutnyeva, K., Gansch, A., and Waigmann, E. (2003) Plant Physiol 132, 1870–1883.
17. Matsushita, Y., Deguchi, M., Youda, M., Nishiguchi, M., and Nyunoya, H. (2001) Mol Cells 12, 57–66.
18. Matsushita, Y., Miyakawa, O., Deguchi, M., Nishiguchi, M., and Nyunoya, H. (2002) J Exp Bot 53, 1531–1532.
19. Baulcombe, D. (2004) Nature 431, 356–363.
20. Waterhouse, P. M., and Helliwell, C. A. (2003) Nat Rev Genet 4, 29–38.
21. Burch-Smith, T. M., Anderson, J. C., Martin, G. B., and Dinesh-Kumar, S. P. (2004) Plant J 39, 734–746.
22. Baulcombe, D. C. (1999) Curr Opin Plant Biol 2, 109–113.
23. Robertson, D. (2004) Annu Rev Plant Biol 55, 495–519.
24. Lu, R., Martin-Hernandez, A. M., Peart, J. R., Malcuit, I., and Baulcombe, D. C. (2003) Methods 30, 296–303.
25. Liu, Y., Schiff, M., Marathe, R., and Dinesh-Kumar, S. P. (2002) Plant J 30, 415–429.
26. Liu, Y., Schiff, M., and Dinesh-Kumar, S. P. (2002) Plant J 31, 777–786.
27. Lu, R., Malcuit, I., Moffett, P., Ruiz, M. T., Peart, J., Wu, A. J., Rathjen, J. P., Bendahmane, A., Day, L., and Baulcombe, D. C. (2003) EMBO J 22, 5690–5699.
28. Liu, Y., Schiff, M., Czymmek, K., Talloczy, Z., Levine, B., and Dinesh-Kumar, S. P. (2005) Cell 121, 567–577.
Acknowledgments
We thank Tessa Burch-Smith for critical reading of the manuscript and Yule Liu for helpful comments. VIGS work in S.P.D.-K. laboratory is supported by National Science Foundation Plant Genome Grant DBI-0211872.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2008 Humana Press, a part of Springer Science + Business Media, LLC
About this protocol
Cite this protocol
Zhu, X., Dinesh-Kumar, S.P. (2008). Virus-Induced Gene Silencing as a Tool to Identify Host Genes Affecting Viral Pathogenicity. In: Foster, G.D., Johansen, I.E., Hong, Y., Nagy, P.D. (eds) Plant Virology Protocols. Methods in Molecular Biology™, vol 451. Humana Press. https://doi.org/10.1007/978-1-59745-102-4_43
Download citation
DOI: https://doi.org/10.1007/978-1-59745-102-4_43
Publisher Name: Humana Press
Print ISBN: 978-1-58829-827-0
Online ISBN: 978-1-59745-102-4
eBook Packages: Springer Protocols