NMR-Based Metabolomics pp 135-147 | Cite as
Fast NMR Methods for Identification of Resonances and Metabolic Pathways
Protocol
First Online:
- 1 Citations
- 1 Mentions
- 1.3k Downloads
Abstract
High-throughput analysis of NMR data in metabolomics involves both rapid data acquisition and analysis. We describe here a data collection and analysis protocol, which enables fast multidimensional NMR data acquisition and automated analysis of NMR spectra to rapidly identify the metabolites and assign them to active metabolic pathways in the system.
Key words
Fast NMR methods Multiple receivers Pattern recognition Metabolite assignments Metabolic pathwaysNotes
Acknowledgments
The high-field NMR facility at NMR Research Centre, Indian Institute of Science, supported by the Department of Science and Technology (India) is gratefully acknowledged. HSA acknowledges research grant from SERB (EMR/2016/003181).
References
- 1.Nagana Gowda GA, Raftery D (2017) Recent advances in NMR-based metabolomics. Anal Chem 89:490–510CrossRefGoogle Scholar
- 2.Markley JL, Bruschweiler R, Edison AS, Eghbalnia HR, Powers R, Raftery D, Wishart DS (2017) The future of NMR-based metabolomics. Curr Opin Biotechnol 43:34–40CrossRefGoogle Scholar
- 3.Ross A, Schlortterbeck G, Dieterle F, Senn H (2007) NMR spectroscopy techniques for application to metabolomics. In: Lindon JC, Nicholson JK, Holmes E (eds) The handbook of metabolomics, 1st edn. Elsevier, AmsterdamGoogle Scholar
- 4.Guennec AL, Giraudeau P, Caldarelli S (2014) Evaluation of fast 2D NMR for metabolomics. Anal Chem 86:5946–5954CrossRefGoogle Scholar
- 5.Pudakalakatti SM, Dubey A, Jaipuria G, Shubhashree U, Adiga SK, Moskau D, Atreya HS (2014) A fast NMR method for resonance assignments: application to metabolomics. J Biomol NMR 58:165–173CrossRefGoogle Scholar
- 6.Kupce E (2013) NMR with multiple receivers. Top Curr Chem 335:71–96CrossRefGoogle Scholar
- 7.Dubey A, Rangarajan A, Pal D, Atreya HS (2015) Pattern recognition based approach for identifying metabolites in nuclear magnetic resonance-based metabolomics. Anal Chem 87:7148–7155CrossRefGoogle Scholar
- 8.Dubey A, Rangarajan A, Pal D, Atreya HS (2015) Chemical shifts to metabolic pathways: identifying metabolic pathways directly from a single 2D NMR spectrum. Anal Chem 87:7148–7155CrossRefGoogle Scholar
- 9.Atreya HS, Szyperski T (2005) Rapid NMR data collection. Methods Enzymol 394:78–108CrossRefGoogle Scholar
- 10.Wolfson HJ (1990) Model-based object recognition by geometric hashing. In: Faugeras O Computer vision-ECCV 90: first European conference on computer vision antibes, France, April 23-27, 1990 proceedings. Springer, BerlinGoogle Scholar
- 11.Wolfson HJ, Rigoutsos I (1997) Geometric hashing: an overview. IEEE Comput Sci Eng 4(4):10–21CrossRefGoogle Scholar
Copyright information
© Springer Science+Business Media, LLC, part of Springer Nature 2019