Skip to main content

In Vitro Selection of Single-Domain Antibody (VHH) Using cDNA Display

  • Protocol
  • First Online:
Antibody Engineering

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1827))

Abstract

Single-domain antibody (e.g., Nanobody, VHH antibody) is a promising scaffold for therapeutic and diagnostic reagents. To expand the range of target molecules, in vitro selection using cell-free display technologies such as cDNA display is useful and powerful because of their huge libraries and robust stability. We provide technical details for in vitro selection of single-domain antibodies using cDNA display.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 279.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Ullman CG, Frigotto L, Cooley RN (2011) In vitro methods for peptide display and their applications. Brief Funct Genomics 10:125–134

    Article  CAS  PubMed  Google Scholar 

  2. Yamaguchi J, Naimuddin M, Biyani M, Sasaki T, Machida M, Kubo T, Funatsu T, Husimi Y, Nemoto N (2009) cDNA display: a novel screening method for functional disulfide-rich peptides by solid-phase synthesis and stabilization of mRNA-protein fusions. Nucleic Acids Res 37:e108

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Mochizuki Y, Biyani M, Tsuji-Ueno S, Suzuki M, Nishigaki K, Husimi Y, Nemoto N (2011) One-pot preparation of mRNA/cDNA display by a novel and versatile puromycin-linker DNA. ACS Comb Sci 13:478–485

    Article  CAS  PubMed  Google Scholar 

  4. Ueno S, Nemoto N (2012) cDNA display: rapid stabilization of mRNA display. Methods Mol Biol 805:237–250

    Article  CAS  Google Scholar 

  5. Mochizuki Y, Nemoto N (2012) Evolution of disulfide-rich peptide aptamers using cDNA display. Methods Mol Biol 805:113–135

    Article  CAS  Google Scholar 

  6. Nemoto N, Miyamoto-Sato E, Husimi Y, Yanagawa H (1997) In vitro virus: bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro. FEBS Lett 414:405–408

    Article  CAS  PubMed  Google Scholar 

  7. Roberts RW, Szostak JW (1997) RNA-peptide fusions for the in vitro selection of peptides and proteins. Proc Natl Acad Sci U S A 94:12297–12302

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Ueno S, Yoshida S, Mondal A, Nishina K, Koyama M, Sakata I, Miura K, Hayashi Y, Nemoto N, Nishigaki K, Sakai T (2012) In vitro selection of a novel peptide antagonist of growth hormone secretagogue receptor using cDNA display. Proc Natl Acad Sci U S A 109:11121–11126

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Ueno S, Kimura S, Ichiki T, Nemoto N (2012) Improvement of a puromycin-linker to extend the selection target varieties in cDNA display method. J Biotechnol 162:299–302

    Article  CAS  PubMed  Google Scholar 

  10. Mochizuki Y, Suzuki T, Fujimoto K, Nemoto N (2015) A versatile puromycin-linker using cnvK for high-throughput in vitro selection by cDNA display. J Biotechnol 212:174–180

    Article  CAS  PubMed  Google Scholar 

  11. Moutel S, Bery N, Bernard V, Keller L, Lemesre E, de Marco A, Ligat L, Rain JC, Favre G, Olichon A, Perez F (2016) NaLi-H1: a universal synthetic library of humanized nanobodies providing highly functional antibodies and intrabodies. elife 5:e16228

    Article  PubMed  PubMed Central  Google Scholar 

  12. Monegal A, Ami D, Martinelli C, Huang H, Aliprandi M, Capasso P, Francavilla C, Ossolengo G, de Marco A (2009) Immunological applications of single-domain llama recombinant antibodies isolated from a naïve library. Protein Eng Des Sel 22:273–280

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

The authors thank previous members of the Nemoto Laboratory who helped to develop this protocol, especially Dr. Yuki Mochizuki, Mr. Shinnosuke Kimura, and Mr. Takeru Suzuki. This work was supported by JSPS KAKENHI Grant Number T15H05723 and Brain and Body System Science Institute (BBSSI), Saitama University.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Naoto Nemoto .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Nemoto, N., Kumachi, S., Arai, H. (2018). In Vitro Selection of Single-Domain Antibody (VHH) Using cDNA Display. In: Nevoltris, D., Chames, P. (eds) Antibody Engineering. Methods in Molecular Biology, vol 1827. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8648-4_14

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-8648-4_14

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-8647-7

  • Online ISBN: 978-1-4939-8648-4

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics