Abstract
Few approaches are currently available that allow the detection of protein-protein interactions (PPIs) in super-resolution, and the observation of the assembly of protein complexes in living cells has been particularly challenging. We developed reconstituted fluorescence-based stochastic optical fluctuation imaging (refSOFI), which is based on bimolecular fluorescence complementation (BiFC) and SOFI, allowing us to detect protein complex assembly 30 min after the induction of complex formation. Here we describe how to use refSOFI to map the assembly of two proteins of interest into a complex within living cells at super-resolution.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Han R, Li Z, Fan Y, Jiang Y (2013) Recent advances in super-resolution fluorescence imaging and its applications in biology. J Genet Genomics 40:583–595. https://doi.org/10.1016/j.jgg.2013.11.003
Hell SW (2007) Far-field optical nanoscopy. Science 316:1153–1158. https://doi.org/10.1126/science.1137395
Gustafsson MGL (2005) Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution. Proc Natl Acad Sci U S A 102:13081–13086. https://doi.org/10.1073/pnas.0406877102
Betzig E, Patterson GH, Sougrat R et al (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science 313:1642–1645. https://doi.org/10.1126/science.1127344
Rust MJ, Bates M, Zhuang X (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 3:793–795. https://doi.org/10.1038/nmeth929
Dertinger T, Colyer R, Vogel R et al (2010) Achieving increased resolution and more pixels with superresolution optical fluctuation imaging (SOFI). Opt Express 18:18875–18885. https://doi.org/10.1364/OE.18.018875
Dedecker P, Mo GCH, Dertinger T, Zhang J (2012) Widely accessible method for superresolution fluorescence imaging of living systems. Proc Natl Acad Sci U S A 109:10909–10914. https://doi.org/10.1073/pnas.1204917109
Kodama Y, C-D H (2012) Bimolecular fluorescence complementation (BiFC): a 5-year update and future perspectives. BioTechniques 53:285–298. https://doi.org/10.2144/000113943
Liu Z, Xing D, QP S et al (2014) Super-resolution imaging and tracking of protein-protein interactions in sub-diffraction cellular space. Nat Commun 5:4443. https://doi.org/10.1038/ncomms5443
Nickerson A, Huang T, Lin L-J, Nan X (2014) Photoactivated localization microscopy with bimolecular fluorescence complementation (BiFC-PALM) for Nanoscale imaging of protein-protein interactions in cells. PLoS One 9:e100589. https://doi.org/10.1371/journal.pone.0100589
Xia P, Liu X, Wu B et al (2014) Superresolution imaging reveals structural features of EB1 in microtubule plus-end tracking. Mol Biol Cell 25:4166–4173. https://doi.org/10.1091/mbc.E14-06-1133
Hertel F, Mo GCH, Duwé S et al (2016) RefSOFI for mapping nanoscale organization of protein-protein interactions in living cells. Cell Rep 14:390–400. https://doi.org/10.1016/j.celrep.2015.12.036
Nagai T, Ibata K, Park ES et al (2002) A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat Biotechnol 20:87–90. https://doi.org/10.1038/nbt0102-87
Ando R, Mizuno H, Miyawaki A (2004) Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting. Science 306:1370–1373. https://doi.org/10.1126/science.1102506
Dedecker P, Duwé S, Neely R, Zhang J (2012) Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy. J Biomed Opt 17:126008. https://doi.org/10.1117/1.JBO.17.12.126008
Vandenberg W, Dedecker P (2017) Effect of probe diffusion on the SOFI imaging accuracy. Sci Rep 7:44665. https://doi.org/10.1038/srep44665
Acknowledgment
This work was supported by NIH (R35 CA197622, R01 DK073368, R01 GM111665, and R01 MH111516 to J.Z.).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Hertel, F., Mo, G.C.H., Dedecker, P., Zhang, J. (2018). Observing the Assembly of Protein Complexes in Living Eukaryotic Cells in Super-Resolution Using refSOFI. In: Marsh, J. (eds) Protein Complex Assembly. Methods in Molecular Biology, vol 1764. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7759-8_16
Download citation
DOI: https://doi.org/10.1007/978-1-4939-7759-8_16
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-7758-1
Online ISBN: 978-1-4939-7759-8
eBook Packages: Springer Protocols