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Bio- and Chemoinformatics Approaches for Metabolomics Data Analysis

  • Michael Witting
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1738)

Abstract

Metabolomics data analysis includes several repetitive tasks, including data sorting, calculation of exact masses or other physicochemical properties, or searching for identifiers in different databases. Several of these tasks can be automated using command line tools or short scripts in different scripting languages like Perl, Python, or R. This chapter presents simple solutions and short scripts written in R that can be used for the interaction with specific web services or for the calculation of physicochemical properties or molecular formulae.

Key words

R, isotope pattern Formula calculation Physicochemical properties Command line Web service Identifier conversion 

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Research Unit Analytical BioGeoChemistryHelmholtz Zentrum München – German Research Center for Environmental HealthNeuherbergGermany
  2. 2.Chair of Analytical Analytical Food Chemistry, Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und UmweltTechnische Universität MünchenFreisingGermany

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