Chromatin RNA Immunoprecipitation (ChRIP)

  • Tanmoy Mondal
  • Santhilal Subhash
  • Chandrasekhar KanduriEmail author
Part of the Methods in Molecular Biology book series (MIMB, volume 1689)


Researchers have recently had a growing interest in understanding the functional role of long noncoding RNAs (lncRNAs) in chromatin organization. Accumulated evidence suggests lncRNAs could act as interphase molecules between chromatin and chromatin remodelers to define the epigenetic code. However, it is not clear how lncRNAs target chromatin remodelers to specific chromosomal regions in order to establish a functionally distinct epigenetic state of chromatin. We developed and optimized chromatin RNA immunoprecipitation (ChRIP) technology to characterize the lncRNAs associated with active and inactive chromatin compartments. Use of ChRIP to identify chromatin-bound lncRNA will further improve our knowledge regarding the functional role of lncRNAs in establishing epigenetic modifications of chromatin.

Key words

Long noncoding RNA Chromatin EZH2 H3K27me3 Gene regulation Epigenetics Inactive chromatin Active chromatin 



This work was supported by the grants from the Knut and Alice Wallenberg Foundation (KAW) (Dnr KAW 2014.0057), Swedish Foundation for Strategic Research (RB13-0204), Swedish Cancer Research Foundation (Cancerfonden: Kontrakt no. 150796), the Swedish Research Council (VR-M: K2014-67X-20781-07-4), Barncancerfonden (PR2014/0147), Ingabritt och Arne Lundbergs forskningsstiftelse and LUA/ALF to C.K.


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Copyright information

© Springer Science+Business Media LLC 2018

Authors and Affiliations

  • Tanmoy Mondal
    • 1
  • Santhilal Subhash
    • 1
  • Chandrasekhar Kanduri
    • 1
    Email author
  1. 1.Department of Medical Biochemistry and Cell BiologyInstitute of Biomedicine, The Sahlgrenska Academy, University of GothenburgGothenburgSweden

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