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Synthesis of Fusion Genes for Cloning by Megaprimer-Based PCR

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PCR

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1620))

Abstract

The polymerase chain reaction (PCR) is the technique of choice used to obtain DNA for cloning, because it rapidly provides high amounts of desired DNA fragments and allows the easy introduction of extremities adequate for enzyme restriction or homologous recombination, and of artificial, native, or modified sequence elements for specific applications. In this context, the use of megaprimer-based PCR strategies allows the versatile and fast assembly and amplification of tailor-made DNA sequences readily available for cloning.

In this chapter, we describe the design and use of a megaprimer-based PCR protocol to construct customized fusion genes ready for cloning into commercial expression plasmids by restriction digestion and ligation.

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References

  1. Oliveira C, Aguiar TQ, Domingues L (2017) 4 – Principles of genetic engineering. In: Pandey A, Teixeira JA (eds) Current developments in biotechnology and bioengineering: Foundations of biotechnology and bioengineering, 1st edn. Elsevier, Oxford, pp 81–127

    Google Scholar 

  2. Oliveira C, Sepúlveda G, Aguiar TQ, Gama FM, Domingues L (2015) Modification of paper properties using carbohydrate-binding module 3 from the Clostridium thermocellum CipA scaffolding protein produced in Pichia pastoris: elucidation of the glycosylation effect. Cellulose 22:2755–2765

    Article  CAS  Google Scholar 

  3. Guerreiro CI, Fontes CM, Gama M, Domingues L (2008) Escherichia coli Expression and purification of four antimicrobial peptides fused to a family 3 carbohydrate-binding module (CBM) from Clostridium thermocellum. Protein Expr Purif 59:161–168

    Article  CAS  Google Scholar 

  4. Oliveira C, Felix W, Moreira RA, Teixeira JA, Domingues L (2008) Expression of frutalin, an α-D-galactose-binding jacalin-related lectin, in the yeast Pichia pastoris. Protein Expr Purif 60:188–193

    Article  CAS  Google Scholar 

  5. Costa SJ, Almeida A, Castro A, Domingues L, Besir H (2013) The novel Fh8 and H fusion partners for soluble protein expression in Escherichia coli: a comparison with the traditional gene fusion technology. Appl Microbiol Biotechnol 97:6779–6791

    Article  CAS  Google Scholar 

  6. Ramos R, Domingues L, Gama M (2010) Escherichia coli Expression and purification of LL37 fused to a family III carbohydrate-binding module from Clostridium thermocellum. Protein Expr Purif 7:1–7

    Article  Google Scholar 

  7. Aguiar TQ, Dinis C, Domingues L (2014) Cre-loxP-based system for removal and reuse of selection markers in Ashbya gossypii targeted engineering. Fungal Genet Biol 68:1–8

    Article  CAS  Google Scholar 

  8. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

    Google Scholar 

  9. Ling MM, Robinson BH (1997) Approaches to DNA mutagenesis: an overview. Anal Biochem 254:157–178

    Article  CAS  Google Scholar 

  10. Wan W, Wang DM, Gao XL, Hong J (2011) Expression of family 3 cellulose-binding module (CBM3) as an affinity tag for recombinant proteins in yeast. Appl Microbiol Biotechnol 91:789–798

    Article  CAS  Google Scholar 

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Acknowledgments

This study was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER-006684), and BioTecNorte operation (NORTE-01-0145-FEDER-000004) funded by European Regional Development Fund under the scope of Norte2020–Programa Operacional Regional do Norte, Project RECI/BBB-EBI/0179/2012 (FCOMP-01-0124-FEDER-027462), Project GlycoCBMs PTDC/AGR-FOR/3090/2012 (FCOMP-01-0124-FEDER-027948), and grant SFRH/BDP/63831/2009 to Carla Oliveira.

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Correspondence to Carla Oliveira .

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Aguiar, T.Q., Oliveira, C., Domingues, L. (2017). Synthesis of Fusion Genes for Cloning by Megaprimer-Based PCR. In: Domingues, L. (eds) PCR. Methods in Molecular Biology, vol 1620. Springer, New York, NY. https://doi.org/10.1007/978-1-4939-7060-5_6

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  • DOI: https://doi.org/10.1007/978-1-4939-7060-5_6

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  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-1-4939-7059-9

  • Online ISBN: 978-1-4939-7060-5

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