Abstract
Surface-exposed proteins of Gram-negative bacteria are represented by integral outer membrane beta-barrel proteins and lipoproteins. No computational methods exist for predicting surface-exposed lipoproteins, and therefore lipoprotein topology must be experimentally tested. This chapter describes three distinct but complementary methods for the detection of surface-exposed proteins: cell surface protein labeling, accessibility to extracellular protease and antibodies.
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References
Silhavy TJ, Kahne D, Walker S (2010) The bacterial cell envelope. Cold Spring Harb Perspect Biol 2(5):a000414
Okuda S, Tokuda H (2011) Lipoprotein sorting in bacteria. Annu Rev Microbiol 65:239–259
Zuckert WR (2014) Secretion of bacterial lipoproteins: through the cytoplasmic membrane, the periplasm and beyond. Biochim Biophys Acta 1843(8):1509–1516
Konovalova A, Silhavy TJ (2015) Outer membrane lipoprotein biogenesis: lol is not the end. Philos Trans R Soc Lond Ser B Biol Sci 370(1679)
Wilson MM, Bernstein HD (2015) Surface-exposed lipoproteins: an emerging secretion phenomenon in gram-negative bacteria. Trends Microbiol
Freeman TC Jr, Wimley WC (2010) A highly accurate statistical approach for the prediction of transmembrane beta-barrels. Bioinformatics 26(16):1965–1974
Singh NK, Goodman A, Walter P, Helms V, Hayat S (2011) TMBHMM: a frequency profile based HMM for predicting the topology of transmembrane beta barrel proteins and the exposure status of transmembrane residues. Biochim Biophys Acta 1814(5):664–670
Hayat S, Elofsson A (2012) BOCTOPUS: improved topology prediction of transmembrane beta barrel proteins. Bioinformatics 28(4):516–522
Hermanson GT (2013) Bioconjugate techniques, 3rd edn. Academic press, London, pp 1–1146
Nikaido H (2003) Molecular basis of bacterial outer membrane permeability revisited. Microbiol Mol Biol Rev 67(4):593–656
Konovalova A, Perlman DH, Cowles CE, Silhavy TJ (2014) Transmembrane domain of surface-exposed outer membrane lipoprotein RcsF is threaded through the lumen of beta-barrel proteins. Proc Natl Acad Sci U S A 111(41):E4350–E4358
Cowles CE, Li Y, Semmelhack MF, Cristea IM, Silhavy TJ (2011) The free and bound forms of Lpp occupy distinct subcellular locations in Escherichia coli. Mol Microbiol 79(5):1168–1181
Rosenbusch JP (1990) Structural and functional properties of porin channels in E. coli outer membranes. Experientia 46(2):167–173
Wilson MM, Anderson DE, Bernstein HD (2015) Analysis of the outer membrane proteome and secretome of Bacteroides fragilis reveals a multiplicity of secretion mechanisms. PLoS One 10(2):e0117732
Pugsley AP, Kornacker MG, Ryter A (1990) Analysis of the subcellular location of pullulanase produced by Escherichia coli carrying the pulA gene from Klebsiella pneumoniae strain UNF5023. Mol Microbiol 4(1):59–72
Pinne M, Haake DA (2009) A comprehensive approach to identification of surface-exposed, outer membrane-spanning proteins of Leptospira interrogans. PLoS One 4(6):e6071
Porter WH, Preston JL (1975) Retention of trypsin and chymotrypsin proteolytic activity in sodium dodecyl sulfate solutions. Anal Biochem 66(1):69–77
Hilz H, Wiegers U, Adamietz P (1975) Stimulation of proteinase K action by denaturing agents: application to the isolation of nucleic acids and the degradation of 'masked' proteins. Eur J Biochem 56(1):103–108
Pinne M, Haake D (2011) Immuno-fluorescence assay of leptospiral surface-exposed proteins. J Vis Exp 53
Blom K, Lundin BS, Bolin I, Svennerholm A (2001) Flow cytometric analysis of the localization of helicobacter pylori antigens during different growth phases. FEMS Immunol Med Microbiol 30(3):173–179
Matsunaga J, Werneid K, Zuerner RL, Frank A, Haake DA (2006) LipL46 is a novel surface-exposed lipoprotein expressed during leptospiral dissemination in the mammalian host. Microbiology 152(Pt 12):3777–3786
Moeck GS, Bazzaz BS, Gras MF, Ravi TS, Ratcliffe MJ, Coulton JW (1994) Genetic insertion and exposure of a reporter epitope in the ferrichrome-iron receptor of Escherichia coli K-12. J Bacteriol 176(14):4250–4259
Newton SM, Klebba PE, Michel V, Hofnung M, Charbit A (1996) Topology of the membrane protein LamB by epitope tagging and a comparison with the X-ray model. J Bacteriol 178(12):3447–3456
Schnell U, Dijk F, Sjollema KA, Giepmans BN (2012) Immunolabeling artifacts and the need for live-cell imaging. Nat Methods 9(2):152–158
Dinh T, Bernhardt TG (2011) Using superfolder green fluorescent protein for periplasmic protein localization studies. J Bacteriol 193(18):4984–4987
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Konovalova, A. (2017). Cell Surface Exposure. In: Journet, L., Cascales, E. (eds) Bacterial Protein Secretion Systems. Methods in Molecular Biology, vol 1615. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7033-9_7
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DOI: https://doi.org/10.1007/978-1-4939-7033-9_7
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