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Evolution and Epidemiology of Chikungunya Virus

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Chikungunya Virus

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1426))

Abstract

Chikungunya is a mosquito-borne Alphavirus that is spreading worldwide in the tropical areas and that has a 11.8 kb RNA genome. The most relevant vectors belong to the genus Aedes and contribute to the diffusion of the three different genotypes of the virus from the original site of first identification in East Africa. Recently, an additional site of origin has been identified in Asia. The epidemiology of Chikungunya has been extensively evaluated from 2004 when the virus initiated its travel eastbound from the coast of Africa to the Indian Ocean. It is noteworthy that this diffusion has been mainly sustained by Ae. albopictus, a new vector to which the virus become adapted due to the mutation E1-Ala226Val. This mutation was also identified during the first, even small, outbreaks of Chikungunya-related disease outside the tropics that occurred in Northern Italy in 2007 and in Southern France in 2010. Three years later the virus appeared for the first time in the Western hemisphere and since then, in less than 24 months spread to North and South America.

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References

  1. Powers AM (2015) Risks to the Americas associated with the continued expansion of chikungunya virus. J Gen Virol 96(Pt 1):1–5. doi:10.1099/vir.0.070136-0

    Article  CAS  PubMed  Google Scholar 

  2. Morrison TE (2014) Reemergence of chikungunya virus. J Virol 88(20):11644–11647. doi:10.1128/JVI.01432-14

    Article  PubMed  PubMed Central  Google Scholar 

  3. Powers AM, Brault AC, Tesh RB, Weaver SC (2000) Re-emergence of Chikungunya and O’nyong-nyong viruses: evidence for distinct geographical lineages and distant evolutionary relationships. J Gen Virol 81(Pt 2):471–479

    Article  CAS  PubMed  Google Scholar 

  4. Volk SM, Chen R, Tsetsarkin KA, Adams AP, Garcia TI, Sall AA, Nasar F, Schuh AJ, Holmes EC, Higgs S, Maharaj PD, Brault AC, Weaver SC (2010) Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates. J Virol 84(13):6497–6504. doi:10.1128/JVI.01603-09

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Ng LC, Hapuarachchi HC (2010) Tracing the path of Chikungunya virus—evolution and adaptation. Infection, genetics and evolution. Infect Genet Evol 10(7):876–885. doi:10.1016/j.meegid.2010.07.012

    Article  PubMed  Google Scholar 

  6. Carey DE (1971) Chikungunya and dengue: a case of mistaken identity? J Hist Med Allied Sci 26(3):243–262

    Article  CAS  PubMed  Google Scholar 

  7. Lumsden WH (1955) An epidemic of virus disease in Southern Province, Tanganyika Territory, in 1952-53. II General description and epidemiology. Trans R Soc Trop Med Hyg 49(1):33–57

    Article  CAS  PubMed  Google Scholar 

  8. Coffey LL, Failloux AB, Weaver SC (2014) Chikungunya virus-vector interactions. Viruses 6(11):4628–4663. doi:10.3390/v6114628

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Hammon WM, Sather GE (1964) Virological findings in the 1960 hemorrhagic fever epidemic (dengue) in Thailand. Am J Trop Med Hyg 13:629–641

    CAS  PubMed  Google Scholar 

  10. Myers RM, Carey DE, Reuben R, Jesudass ES, De Ranitz C, Jadhav M (1965) The 1964 epidemic of dengue-like fever in South India: isolation of chikungunya virus from human sera and from mosquitoes. Indian J Med Res 53(8):694–701

    CAS  PubMed  Google Scholar 

  11. Shah KV, Gibbs CJ Jr, Banerjee G (1964) Virological investigation of the epidemic of haemorrhagic fever in Calcutta: isolation of three strains of chikungunya virus. Indian J Med Res 52:676–683

    CAS  PubMed  Google Scholar 

  12. Dandawate CN, Thiruvengadam KV, Kalyanasundaram V, Rajagopal J, Rao TR (1965) Serological survey in Madras city with special reference to chikungunya. Indian J Med Res 53(8):707–714

    CAS  PubMed  Google Scholar 

  13. Halstead SB, Scanlon JE, Umpaivit P, Udomsakdi S (1969) Dengue and chikungunya virus infection in man in Thailand, 1962-1964. IV Epidemiologic studies in the Bangkok metropolitan area. Am J Trop Med Hyg 18(6):997–1021

    CAS  PubMed  Google Scholar 

  14. Mavalankar D, Shastri P, Bandyopadhyay T, Parmar J, Ramani KV (2008) Increased mortality rate associated with chikungunya epidemic, Ahmedabad, India. Emerg Infect Dis 14(3):412–415. doi:10.3201/eid1403.070720

    Article  PubMed  PubMed Central  Google Scholar 

  15. Chretien JP, Anyamba A, Bedno SA, Breiman RF, Sang R, Sergon K, Powers AM, Onyango CO, Small J, Tucker CJ, Linthicum KJ (2007) Drought-associated chikungunya emergence along coastal East Africa. Am J Trop Med Hyg 76(3):405–407

    PubMed  Google Scholar 

  16. Charrel RN, de Lamballerie X, Raoult D (2007) Chikungunya outbreaks—the globalization of vectorborne diseases. New Engl J Med 356(8):769–771. doi:10.1056/NEJMp078013

    Article  CAS  PubMed  Google Scholar 

  17. Gerardin P, Guernier V, Perrau J, Fianu A, Le Roux K, Grivard P, Michault A, de Lamballerie X, Flahault A, Favier F (2008) Estimating Chikungunya prevalence in La Reunion Island outbreak by serosurveys: two methods for two critical times of the epidemic. BMC Infect Dis 8:99. doi:10.1186/1471-2334-8-99

    Article  PubMed  PubMed Central  Google Scholar 

  18. Outbreak and spread of chikungunya (2007). Weekly epidemiological record/Health Section of the Secretariat of the League of Nations 82 (47), 409–415

    Google Scholar 

  19. Mavalankar D, Shastri P, Raman P (2007) Chikungunya epidemic in India: a major public-health disaster. Lancet Infect Dis 7(5):306–307. doi:10.1016/S1473-3099(07)70091-9

    Article  PubMed  Google Scholar 

  20. Parola P, de Lamballerie X, Jourdan J, Rovery C, Vaillant V, Minodier P, Brouqui P, Flahault A, Raoult D, Charrel RN (2006) Novel chikungunya virus variant in travelers returning from Indian Ocean islands. Emerg Infect Dis 12(10):1493–1499. doi:10.3201/eid1210.060610

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, Lavenir R, Pardigon N, Reynes JM, Pettinelli F, Biscornet L, Diancourt L, Michel S, Duquerroy S, Guigon G, Frenkiel MP, Brehin AC, Cubito N, Despres P, Kunst F, Rey FA, Zeller H, Brisse S (2006) Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak. PLoS Med 3(7):e263. doi:10.1371/journal.pmed.0030263

    Article  PubMed  PubMed Central  Google Scholar 

  22. Arankalle VA, Shrivastava S, Cherian S, Gunjikar RS, Walimbe AM, Jadhav SM, Sudeep AB, Mishra AC (2007) Genetic divergence of Chikungunya viruses in India (1963-2006) with special reference to the 2005-2006 explosive epidemic. J Gen Virol 88(Pt 7):1967–1976. doi:10.1099/vir.0.82714-0

    Article  CAS  PubMed  Google Scholar 

  23. Tsetsarkin KA, Vanlandingham DL, McGee CE, Higgs S (2007) A single mutation in chikungunya virus affects vector specificity and epidemic potential. PLoS Pathog 3(12):e201. doi:10.1371/journal.ppat.0030201

    Article  PubMed  PubMed Central  Google Scholar 

  24. Vazeille M, Moutailler S, Coudrier D, Rousseaux C, Khun H, Huerre M, Thiria J, Dehecq JS, Fontenille D, Schuffenecker I, Despres P, Failloux AB (2007) Two Chikungunya isolates from the outbreak of La Reunion (Indian Ocean) exhibit different patterns of infection in the mosquito, Aedes albopictus. PLoS One 2(11):e1168. doi:10.1371/journal.pone.0001168

    Article  PubMed  PubMed Central  Google Scholar 

  25. Rezza G, Nicoletti L, Angelini R, Romi R, Finarelli AC, Panning M, Cordioli P, Fortuna C, Boros S, Magurano F, Silvi G, Angelini P, Dottori M, Ciufolini MG, Majori GC, Cassone A, group Cs (2007) Infection with chikungunya virus in Italy: an outbreak in a temperate region. Lancet 370(9602):1840–1846. doi:10.1016/S0140-6736(07)61779-6

    Article  CAS  PubMed  Google Scholar 

  26. Angelini R, Finarelli AC, Angelini P, Po C, Petropulacos K, Silvi G, Macini P, Fortuna C, Venturi G, Magurano F, Fiorentini C, Marchi A, Benedetti E, Bucci P, Boros S, Romi R, Majori G, Ciufolini MG, Nicoletti L, Rezza G, Cassone A (2007) Chikungunya in north-eastern Italy: a summing up of the outbreak. Euro Surveill 12(11):E071122.2

    CAS  PubMed  Google Scholar 

  27. Grandadam M, Caro V, Plumet S, Thiberge JM, Souares Y, Failloux AB, Tolou HJ, Budelot M, Cosserat D, Leparc-Goffart I, Despres P (2011) Chikungunya virus, southeastern France. Emerg Infect Dis 17(5):910–913. doi:10.3201/eid1705.101873

    Article  PubMed  PubMed Central  Google Scholar 

  28. Rianthavorn P, Prianantathavorn K, Wuttirattanakowit N, Theamboonlers A, Poovorawan Y (2010) An outbreak of chikungunya in southern Thailand from 2008 to 2009 caused by African strains with A226V mutation. Intl J Infect Dis 14(Suppl 3):e161–e165. doi:10.1016/j.ijid.2010.01.001

    Article  Google Scholar 

  29. AbuBakar S, Sam IC, Wong PF, MatRahim N, Hooi PS, Roslan N (2007) Reemergence of endemic Chikungunya, Malaysia. Emerg Infect Dis 13(1):147–149. doi:10.3201/eid1301.060617

    Article  PubMed  PubMed Central  Google Scholar 

  30. Pulmanausahakul R, Roytrakul S, Auewarakul P, Smith DR (2011) Chikungunya in Southeast Asia: understanding the emergence and finding solutions. Intl J Infect Dis 15(10):e671–e676. doi:10.1016/j.ijid.2011.06.002

    Article  Google Scholar 

  31. Leparc-Goffart I, Nougairede A, Cassadou S, Prat C, de Lamballerie X (2014) Chikungunya in the Americas. Lancet 383(9916):514. doi:10.1016/S0140-6736(14)60185-9

    Article  PubMed  Google Scholar 

  32. Lanciotti RS, Valadere AM (2014) Transcontinental movement of Asian genotype chikungunya virus. Emerg Infect Dis 20(8):1400–1402. doi:10.3201/eid2008.140268

    Article  PubMed  PubMed Central  Google Scholar 

  33. Tsetsarkin KA, Chen R, Leal G, Forrester N, Higgs S, Huang J, Weaver SC (2011) Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes. Proc Natl Acad Sci U S A 108(19):7872–7877. doi:10.1073/pnas.1018344108

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. Nunes MR, Faria NR, de Vasconcelos JM, Golding N, Kraemer MU, de Oliveira LF, Azevedo Rdo S, da Silva DE, da Silva EV, da Silva SP, Carvalho VL, Coelho GE, Cruz AC, Rodrigues SG, Vianez JL Jr, Nunes BT, Cardoso JF, Tesh RB, Hay SI, Pybus OG, Vasconcelos PF (2015) Emergence and potential for spread of Chikungunya virus in Brazil. BMC Med 13:102. doi:10.1186/s12916-015-0348-x

    Article  PubMed  PubMed Central  Google Scholar 

  35. Teixeira MG, Andrade AM, Costa Mda C, Castro JN, Oliveira FL, Goes CS, Maia M, Santana EB, Nunes BT, Vasconcelos PF (2015) East/Central/South African genotype chikungunya virus, Brazil, 2014. Emerg Infect Dis 21(5):906–907. doi:10.3201/eid2105.141727

    Article  PubMed  PubMed Central  Google Scholar 

  36. Delisle E, Rousseau C, Broche B, Leparc-Goffart I, L'Ambert G, Cochet A, Prat C, Foulongne V, Ferre JB, Catelinois O, Flusin O, Tchernonog E, Moussion IE, Wiegandt A, Septfons A, Mendy A, Moyano MB, Laporte L, Maurel J, Jourdain F, Reynes J, Paty MC, Golliot F (2015) Chikungunya outbreak in Montpellier, France, September to October 2014. Euro Surveill 20(17)

    Google Scholar 

  37. Weaver SC (2014) Arrival of chikungunya virus in the new world: prospects for spread and impact on public health. PLos Negl Trop Dis 8(6):e2921. doi:10.1371/journal.pntd.0002921

    Article  PubMed  PubMed Central  Google Scholar 

  38. Weaver SC, Forrester NL (2015) Chikungunya: evolutionary history and recent epidemic spread. Antivir Res 120:32–39. doi:10.1016/j.antiviral.2015.04.016

    Article  CAS  PubMed  Google Scholar 

  39. Weaver SC, Lecuit M (2015) Chikungunya virus and the global spread of a mosquito-borne disease. N Engl J Med 372(13):1231–1239. doi:10.1056/NEJMra1406035

    Article  CAS  PubMed  Google Scholar 

  40. Leo YS, Chow AL, Tan LK, Lye DC, Lin L, Ng LC (2009) Chikungunya outbreak, Singapore, 2008. Emerg Infect Dis 15(5):836–837. doi:10.3201/eid1505.081390

    Article  PubMed  PubMed Central  Google Scholar 

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Correspondence to Giada Rossini .

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Rossini, G., Landini, M.P., Sambri, V. (2016). Evolution and Epidemiology of Chikungunya Virus. In: Chu, J., Ang, S. (eds) Chikungunya Virus. Methods in Molecular Biology, vol 1426. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3618-2_1

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  • DOI: https://doi.org/10.1007/978-1-4939-3618-2_1

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