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Assessing Gravitropic Responses in Arabidopsis

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Book cover Environmental Responses in Plants

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1398))

Abstract

Arabidopsis thaliana was the first higher organism to have its genome sequenced and is now widely regarded as the model dicot. Like all plants, Arabidopsis develops distinct growth patterns in response to different environmental stimuli. This can be seen in the gravitropic response of roots. Methods to investigate this particular tropism are presented here. First, we describe a high-throughput time-lapse photographic analysis of root growth and curvature response to gravistimulation allowing the quantification of gravitropic kinetics and growth rate at high temporal resolution. Second, we present a protocol that allows a quantitative evaluation of gravitropic sensitivity using a homemade 2D clinostat. Together, these approaches allow an initial comparative analysis of the key phenomena associated with root gravitropism between different genotypes and/or accessions.

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References

  1. Galvan Ampudia C, Julkowska M, Darwish E, Gandullo J, Korver R et al (2013) Halotropism Is a response of plant roots to avoid a saline environment. Curr Biol 23:204450

    Article  Google Scholar 

  2. Massa G, Gilroy S (2003) Touch modulates gravity sensing to regulate the growth of primary roots of Arabidopsis thaliana. Plant J 33:43545

    Article  Google Scholar 

  3. Takahashi N, Yamazaki Y, Kobayashi A, Higashitani A, Takahashi H (2003) Hydrotropism interacts with gravitropism by degrading amyloplasts in seedling roots of Arabidopsis and radish. Plant Physiol 132(805):10

    Google Scholar 

  4. Baldwin K, Strohm A, Masson P (2013) Gravity sensing and signal transduction in vascular plant primary roots. Am J Bot 100(1):126–142

    Article  CAS  PubMed  Google Scholar 

  5. Strohm A, Baldwin K, Masson P (2012) Molecular mechanisms of root gravity sensing and signal transduction. Wiley Interdiscip Rev Dev Biol 1:276–285

    Article  CAS  PubMed  Google Scholar 

  6. Strohm A, Baldwin K, Masson P (2012) Multiple roles for membrane-associated protein trafficking and signaling in gravitropism. Front Plant Sci 3:274

    Article  PubMed Central  PubMed  Google Scholar 

  7. Larsen P (1962) Orthogravitropism in roots. In: Ruhland W (ed) Encyclopedia of plant physiol, Vol 17, Part 2, physiology of movements. Springer-Verlag, Berlin, pp 153–199

    Google Scholar 

  8. Perbal G, Jeune B, Lefranc A, Carnero-Diaz E, Driss-Ecole D (2002) The dose-response curve of the gravitropic reaction: a re-analysis. Physiol Plant 114:336–342

    Article  CAS  PubMed  Google Scholar 

  9. Young L, Harrison B, Murthy N, Moffatt B, Gilroy S, Masson P (2006) Adenosine kinase modulates root gravitropism and cap morphogenesis in Arabidopsis thaliana. Plant Physiol 142:564–573

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  10. Brunoud G, Wells DM, Oliva M, Larrieu A, Mirabet V, Burrow AH, Beeckman T et al (2012) A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature 482(7383):103–106

    Article  CAS  PubMed  Google Scholar 

  11. Brooks T, Miller N, Spalding E (2010) Plasticity of Arabidopsis root Gravitropism throughout a multidimensional condition space quantified by automated image analysis. Plant Physiol 152(1):206–216

    Article  CAS  PubMed  Google Scholar 

  12. Wells D, French A, Naeem A, Ishaq O, Traini R, Hijazi H, Bennett M, Pridmore T (2012) Recovering the dynamics of root growth and development using novel image acquisition and analysis methods. Philos Trans R Soc B: Biol Sci 367(1595):1517–1524

    Article  Google Scholar 

  13. Sangari A, Ohme-Takagi M, Mitsuda N, Assadi A (2012) Automated imaging & high-throughput phenotyping, massively parallel image acquisition, analysis and modeling: mapping plant genotype-phenotype relation. Cold Spring Harbor, Cold Spring Harbor, NY

    Google Scholar 

  14. Russino A, Ascrizzi A, Popova L, Tonazzini A, Mancuso S, Mazzolai B (2013) A novel tracking tool for the analysis of plant-root tip movements. Bioinspir Biomim 8:025004

    Article  CAS  PubMed  Google Scholar 

  15. Buer CS, Wasteneys GO, Masle J (2003) Ethylene modulates root-wave responses in Arabidopsis. Plant Physiol 132:1085–1096

    Article  PubMed Central  CAS  PubMed  Google Scholar 

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Correspondence to Richard Barker .

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Barker, R., Cox, B., Silber, L., Sangari, A., Assadi, A., Masson, P. (2016). Assessing Gravitropic Responses in Arabidopsis . In: Duque, P. (eds) Environmental Responses in Plants. Methods in Molecular Biology, vol 1398. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3356-3_2

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  • DOI: https://doi.org/10.1007/978-1-4939-3356-3_2

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3354-9

  • Online ISBN: 978-1-4939-3356-3

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