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Application of T-Pattern Analysis in the Study of Rodent Behavior: Methodological and Experimental Highlights

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Discovering Hidden Temporal Patterns in Behavior and Interaction

Abstract

In our laboratories we use T-pattern analysis to study rat behavior in different and well-known experimental assays widely employed as rodent models of anxiety: the open field, the hole board and the elevated plus maze. By using Theme software and T-pattern analysis, we have observed that numerous events, characterizing rodent behavior in each experimental model, occurred sequentially and with significant constraints on the interval lengths separating them. In this chapter, for each test, we highlight some key aspects of our behavioral analyses, with a twofold attempt: first to provide the researcher with useful information concerning the application of T-pattern analysis in the study of rodent behavior and, second, to present and discuss various results of our studies.

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References

  1. Spruijt BM, Gispen WH (1984) Behavioral sequences as an easily quantifiable parameter in experimental studies. Physiol Behav 32:707–710

    Article  CAS  PubMed  Google Scholar 

  2. Casarrubea M, Sorbera F, Crescimanno G (2009) Multivariate data handling in the study of rat behavior: an integrated approach. Behav Res Methods 41:772–781

    Article  PubMed  Google Scholar 

  3. Espejo EF, Mir D (1993) Structure of the rat's behaviour in the hot plate test. Behav Brain Res 56:171–176

    Article  CAS  PubMed  Google Scholar 

  4. Espejo EF, Mir D (1994) Differential effects of weekly and daily exposure to the hot plate on the rat's behavior. Physiol Behav 55:1157–1162

    Article  CAS  PubMed  Google Scholar 

  5. Casarrubea M, Sorbera F, Crescimanno G (2006) Effects of 7-OH-DPAT and U 99194 on the behavioral response to hot plate test, in rats. Physiol Behav 89:552–562

    Article  CAS  PubMed  Google Scholar 

  6. Casarrubea M, Sorbera F, Santangelo A, Crescimanno G (2011) Learning influence on the behavioral structure of rat response to pain in hot-plate. Behav Brain Res 225:177–183

    Article  PubMed  Google Scholar 

  7. Casarrubea M, Sorbera F, Crescimanno G (2008) Multivariate analysis of the modifications induced by an environmental acoustic cue on rat exploratory behavior. Physiol Behav 93:687–696

    Article  CAS  PubMed  Google Scholar 

  8. Casarrubea M, Sorbera F, Crescimanno G (2009) Structure of rat behavior in hole-board: I) multivariate analysis of response to anxiety. Physiol Behav 96:174–179

    Article  CAS  PubMed  Google Scholar 

  9. Casarrubea M, Sorbera F, Crescimanno G (2009) Structure of rat behavior in hole-board: II) multivariate analysis of modifications induced by diazepam. Physiol Behav 96:683–692

    Article  CAS  PubMed  Google Scholar 

  10. Casarrubea M, Sorbera F, Santangelo A, Crescimanno G (2010) Microstructure of rat behavioral response to anxiety in hole-board. Neurosci Lett 481:82–87

    Article  CAS  PubMed  Google Scholar 

  11. Cruz AP, Frei F, Graeff FG (1994) Ethopharmacological analysis of rat behavior on the elevated plus-maze. Pharmacol Biochem Behav 49:171–176

    Article  CAS  PubMed  Google Scholar 

  12. Espejo EF (1997) Structure of the mouse behaviour on the elevated plus-maze test of anxiety. Behav Brain Res 86:105–112

    Article  Google Scholar 

  13. Lino-de-Oliveira C, De Lima TC, de Pádua Carobrez A (2005) Structure of the rat behaviour in the forced swimming test. Behav Brain Res 158:243–250

    Article  PubMed  Google Scholar 

  14. Magnusson MS (2000) Discovering hidden time patterns in behavior: t-patterns and their detection. Behav Res Methods Instrum Comput 32:93–110

    Article  CAS  PubMed  Google Scholar 

  15. Casarrubea M, Jonsson GK, Faulisi F, Sorbera F, Di Giovanni G, Benigno A, Crescimanno G, Magnusson MS (2015) T-pattern analysis for the study of temporal structure of animal and human behavior: a comprehensive review. J Neurosci Methods 239:34–46

    Article  CAS  PubMed  Google Scholar 

  16. Kemp AS, Fillmore PT, Lenjavi MR, Lyon M, Chicz-Demet A, Touchette PE et al (2008) Temporal patterns of self-injurious behavior correlate with stress hormone levels in the developmentally disabled. Psychiatry Res 157:181–189

    Article  CAS  PubMed  Google Scholar 

  17. Bonasera SJ, Schenk AK, Luxenberg EJ, Tecott LH (2008) A novelmethod for automatic quantification of psychostimulant-evoked route-tracing stereotypy: application to Mus musculus. Psychopharmacology (Berl) 196:591–602

    Article  CAS  Google Scholar 

  18. Kerepesi A, Kubinyi E, Jonsson GK, Magnusson MS, Miklósi A (2006) Behavioral comparison of human-animal (dog) and human-robot (AIBO) interactions. Behav Process 73:92–99

    Article  CAS  Google Scholar 

  19. Hirschenhauser K, Frigerio D, Grammer K, Magnusson MS (2002) Monthly patterns of testosterone and behavior in prospective fathers. Horm Behav 42:172–181

    Article  CAS  PubMed  Google Scholar 

  20. Hocking PM, Rutherford KMD, Picard M (2007) Comparison of time-based frequencies, fractal analysis and t-patterns for assessing behavioral changes in broiler breeders fed on two diets at two levels of feed restriction: a case study. Appl Animal Behav Sci 104:37–48

    Article  Google Scholar 

  21. Horn C, Henry S, Meyers K, Magnusson MS (2011) Behavioral patterns associated with chemotherapy-induced emesis: a potential signature for nausea in musk shrews. Front Neurosci 5:1–17

    Article  Google Scholar 

  22. Casarrubea M, Sorbera F, Magnusson M, Crescimanno G (2010) Temporal patterns analysis of rat behavior in hole-board. Behav Brain Res 208:124–131

    Article  PubMed  Google Scholar 

  23. Casarrubea M, Sorbera F, Magnusson MS, Crescimanno G (2011) T-pattern analysis of diazepam-induced modifications on the temporal organization of rat behavioral response to anxiety in hole-board. Psychopharmacology (Berl) 215:177–189

    Article  CAS  Google Scholar 

  24. Casarrubea M, Roy V, Sorbera F, Magnusson MS, Santangelo A, Arabo A, Crescimanno G (2013) Temporal structure of the rat's behavior in elevated plus maze test. Behav Brain Res 237:290–299

    Article  CAS  PubMed  Google Scholar 

  25. Drai D, Kafkafi N, Benjamini Y, Elmer G, Golani I (2001) Rats and mice share common ethologically relevant parameters of exploratory behavior. Behav Brain Res 125:133–140

    Article  CAS  PubMed  Google Scholar 

  26. Choleris E, Thomas AW, Kavaliers M, Prato FS (2001) A detailed ethological analysis of the mouse open field test: effects of diazepam, chlordiazepoxide and an extremely low frequency pulsed magnetic field. Neurosci Biobehav Rev 25:235–260

    Article  CAS  PubMed  Google Scholar 

  27. Prut L, Belzung C (2003) The open field as a paradigm to measure the effects of drugs on anxiety-like behaviors: a review. Eur J Pharmacol 463:3–33

    Article  CAS  PubMed  Google Scholar 

  28. File SE, Wardill AG (1975) The reliability of the hole-board apparatus. Psychopharmacologia 44:47–51

    Article  CAS  PubMed  Google Scholar 

  29. Rodriguez Echandia EL, Broitman ST, Foscolo MR (1987) Effect of the chronic ingestion of chlorimipramine and desipramine on the hole board response to acute stresses in male rats. Pharm Biochem Behav 26:207–210

    Article  CAS  Google Scholar 

  30. Adamec R, Head D, Blundell J, Burton P, Berton O (2006) Lasting anxiogenic effects of feline predator stress in mice: Sex differences in vulnerability to stress and predicting severity of anxiogenic response from the stress experience. Physiol Behav 88:12–29

    Article  CAS  PubMed  Google Scholar 

  31. Harada K, Aota M, Inoue T, Matsuda R, Mihara T, Yamaji T, Ishibashi K, Matsuoka N (2006) Anxiolytic activity of a novel potent serotonin 5-HT2C receptor antagonist FR260010: a comparison with diazepam and buspirone. Eur J Pharmacol 553:171–184

    Article  CAS  PubMed  Google Scholar 

  32. Saitoh A, Yamada M, Yamada M, Kobayashi S, Hirose N, Honda K, Kamei J (2006) ROCK inhibition produces anxiety-related behaviors in mice. Psychopharmacology 188:1–11

    Article  CAS  PubMed  Google Scholar 

  33. Kalueff AV, Wheaton M, Murphy DL (2007) What’s wrong with my mouse model? Advances and strategies in animal modeling of anxiety and depression. Behav Brain Res 179:1–18

    Article  CAS  PubMed  Google Scholar 

  34. Kamei J, Hirose N, Oka T, Miyata S, Saitoh A, Yamada M (2007) Effects of metylphenidate on the hyperemotional behavior in olfactory bulbectomized mice by using the hole-board test. J Pharmacol Sci 103:175–180

    Article  CAS  PubMed  Google Scholar 

  35. File SE, Wardill AG (1975) Validity of head-dipping as a measure of exploration in a modified hole-board. Psychopharmacologia 44:53–59

    Article  CAS  PubMed  Google Scholar 

  36. Hughes RN (2007) Neotic preferences in laboratory rodents: Issues, assessment and substrates. Neurosci Biobehav Rev 31:441–464

    Article  PubMed  Google Scholar 

  37. Ohl F, Holsboer F, Landgraf R (2001) The modified hole board as a differential screen for behavior in rodents. Behav Res Methods Instrum Comput 33:392–397

    Article  CAS  PubMed  Google Scholar 

  38. Takeda H, Tsuji M, Matsumiya T (1998) Changes in head-dipping behavior in the hole-board test reflect the anxiogenic and/or anxiolytic state in mice. Eur J Pharmacol 350:21–29

    Article  CAS  PubMed  Google Scholar 

  39. Handley SL, Mithani S (1984) Effects of alpha-adrenoreceptor agonists and antagonists in a maze exploration model of “fear”-motivated behavior. Naunyn Schmiedeberg's Arch Pharmacol 327:1–5

    Article  CAS  Google Scholar 

  40. Carobrez AP, Bertoglio LJ (2005) Ethological and temporal analyses of anxiety-like behavior: The elevated plus-maze model 20 years on. Neurosci Biobehav Rev 29:1193–1205

    Article  CAS  PubMed  Google Scholar 

  41. Roy V, Chapillon P, Jeljeli M, Caston J, Belzung C (2009) Free versus forced exposure to an elevated plus-maze: evidence for new behavioral interpretations during test and retest. Psychopharmacology (Berl) 203:131–141

    Article  CAS  Google Scholar 

  42. Treit D, Menard J, Royan C (1993) Anxiogenic stimuli in the elevated plus-maze. Pharmacol Biochem Behav 44:463–469

    Article  CAS  PubMed  Google Scholar 

  43. Augustsson H, Dahlborn K, Meyerson BJ (2005) Exploration and risk assessment in female wild house mice (Mus musculus musculus) and two laboratory strains. Physiol Behav 84:265–277

    Article  CAS  PubMed  Google Scholar 

  44. Simon P, Dupuis R, Costentin J (1994) Thigmotaxis as an index of anxiety in mice. Influence of dopaminergic transmissions. Behav Brain Res 61:59–64

    Article  CAS  PubMed  Google Scholar 

  45. Metz GA, Kolb B, Whishaw IQ (2005) Neuropsychological tests. In: Whishaw IQ, Kolb B (eds) The behavior of the laboratory rat. Oxford University Press, Oxford

    Google Scholar 

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Correspondence to Maurizio Casarrubea .

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This chapter is dedicated to the memory of my father Prof. Giuseppe Casarrubea (March 4th 1946—June 7th 2015), historian and writer. His meticulous and patient work has clarified numerous and obscure aspects in the modern history of Italy.

As historian, he was fascinated by concepts and theories concerning T-patterns and the related possibility to study repetition of events from a scientific point of view.

As father, he would have been happy to read this book and proud to see his son Coeditor with such prestigious Colleagues and Authors.

Maurizio CasarrubeaPalermo, June 15th 2015

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Casarrubea, M. et al. (2016). Application of T-Pattern Analysis in the Study of Rodent Behavior: Methodological and Experimental Highlights. In: Magnusson, M., Burgoon, J., Casarrubea, M. (eds) Discovering Hidden Temporal Patterns in Behavior and Interaction. Neuromethods, vol 111. Springer, New York, NY. https://doi.org/10.1007/978-1-4939-3249-8_12

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  • DOI: https://doi.org/10.1007/978-1-4939-3249-8_12

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  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-1-4939-3248-1

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