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Analysis of Protein–Lipid Interactions Using Purified C2 Domains

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Plant Signal Transduction

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1363))

Abstract

C2 domains (C2s) are regulatory protein modules identified in eukaryotic proteins targeted to cell membranes. C2s were initially characterized as independently folded Ca2+-dependent phospholipids binding domains; however, later studies have shown that C2s have evolutionarily diverged into Ca2+-dependent and Ca2+-independent forms. These forms interact and regulate their affinity to diverse lipid species using different binding mechanisms. In this protocol we describe a biochemical approach to produce, purify, and solubilize functional C2 domains bound to GST for the identification of their putative Ca2+-dependent and Ca2+-independent lipid-binding partners.

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References

  1. Sutton RB, Davletov BA et al (1995) Structure of the first C2 domain of synaptotagmin I: a novel Ca2+/phospholipid-binding fold. Cell 80:929–938

    Article  CAS  PubMed  Google Scholar 

  2. Parker PJ, Coussens L et al (1986) The complete primary structure of protein kinase C – the major phorbol ester receptor. Science 233:853–859

    Article  CAS  PubMed  Google Scholar 

  3. Davletov BA, Südhof TC (1993) A single C2 domain from synaptotagmin I is sufficient for high affinity Ca2+/phospholipid binding. J Biol Chem 268:26386–26390

    CAS  PubMed  Google Scholar 

  4. Zhang D, Aravind L (2010) Identification of novel families and classification of the C2 domain superfamily elucidate the origin and evolution of membrane targeting activities in eukaryotes. Gene 469:18–30

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  5. Giordano F, Saheki Y et al (2013) PI(4,5)P(2)-dependent and Ca(2+)-regulated ER-PM interactions mediated by the extended synaptotagmins. Cell 153:1494–1509

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  6. Lee H, Yang Y, Su Z et al (2010) Dynamic Ca2 + -dependent stimulation of vesicle fusion by membrane-anchored synaptotagmin 1. Science 328:760–763

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  7. Oancea E, Meyer T (1998) Protein kinase C as a molecular machine for decoding calcium and diacylglycerol signals. Cell 95:307–318

    Article  CAS  PubMed  Google Scholar 

  8. Stahelin RV (2009) Lipid binding domains: more than simple lipid effectors. J Lipid Res 50:S299–S304

    Article  PubMed Central  PubMed  Google Scholar 

  9. Leonard TA (2013) C2 domain. In: Uversky VN et al (eds) Encyclopedia of metalloproteins. Springer Science + Business Media, New York, pp 309–318

    Chapter  Google Scholar 

  10. Xu J, Bacaj T et al (2014) Structure and Ca2+-binding properties of the tandem C2 domains of E-Syt2. Structure 22:269–280

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  11. Guillén J, Ferrer-Orta C et al (2013) Structural insights into the Ca2+ and PI(4,5)P2 binding modes of the C2 domains of rabphilin 3A and synaptotagmin 1. Proc Natl Acad Sci U S A 110:20503–20508

    Article  PubMed Central  PubMed  Google Scholar 

  12. Sutton RB, Sprang SR (1998) Structure of the protein kinase Cβ phospholipid-binding C2 domain complexed with Ca2+. Structure 6:1395–1405

    Article  CAS  PubMed  Google Scholar 

  13. Murray D, Honig B (2002) Electrostatic control of the membrane targeting of C2 domains. Mol Cell 9:145–154

    Article  CAS  PubMed  Google Scholar 

  14. Nalefski EA, Falke JJ et al (1996) The C2 domain calcium-binding motif: structural and functional diversity. Protein Sci 5:2375–2390

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  15. Schapire AL, Voigt B et al (2008) Arabidopsis synaptotagmin 1 is required for the maintenance of plasma membrane integrity and cell viability. Plant Cell 20:3374–3388

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  16. Pérez-Sancho J, Vanneste S et al (2015) The Arabidopsis SYT1 is enriched in ER-PM contact sites and confers cellular resistance to mechanical stresses. Plant Physiol. 168:132–143

    Google Scholar 

  17. Craxton M (2004) Synaptotagmin gene content of the sequenced genomes. BMC Genomics 5:43

    Article  PubMed Central  PubMed  Google Scholar 

  18. Frankel S, Sohn R, Leinwand L (1990) The use of sarkosyl in generating soluble protein after bacterial expression. Proc Natl Acad Sci U S A 88:1192–1196

    Article  Google Scholar 

  19. Tao H, Liu W et al (2010) Purifying natively folded proteins from inclusion bodies using sarkosyl, Triton X-100, and CHAPS. Biotechniques 48:61–64

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by the FPI-BES 2012-052324 from Spanish MICINN (to JPS), BIO2011-23859 cofinanced by the European Regional Development Fund and by Grant no. P07-CVI-03021 by La Consejería de Innovación Ciencia y Empresa-La Junta de Andalucía confinanced by the European Regional Development Fund (to MAB), and the NSERC Discovery Grant RGPIN-2014-06468 and NSERC Canada Research Chairs program (to AR).

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Correspondence to Abel Rosado .

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Pérez-Sancho, J., Schapire, A.L., Botella, M.A., Rosado, A. (2016). Analysis of Protein–Lipid Interactions Using Purified C2 Domains. In: Botella, J., Botella, M. (eds) Plant Signal Transduction. Methods in Molecular Biology, vol 1363. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3115-6_14

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  • DOI: https://doi.org/10.1007/978-1-4939-3115-6_14

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3114-9

  • Online ISBN: 978-1-4939-3115-6

  • eBook Packages: Springer Protocols

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