Abstract
Microscopic imaging techniques play a pivotal role in the life sciences. Here we describe labeling and imaging methods for live yeast cell imaging. Yeast is an excellent reference organism for biomedical research to investigate fundamental cellular processes, and has gained great popularity also for large-scale imaging-based screens. Methods are described to label live yeast cells with organelle-specific fluorescent dyes or GFP-tagged proteins, and how cells are maintained viable over extended periods of time during microscopy. We point out common pitfalls and potential microscopy artifacts arising from inhomogeneous labeling and depending on cellular physiology. Application and limitation of bleaching techniques to address dynamic processes in the yeast cell are described.
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References
Hell SW, Wichmann J (1994) Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. Opt Lett 19:780–782
Schermelleh L, Heintzmann R, Leonhardt H (2010) A guide to super-resolution fluorescence microscopy. J Cell Biol 190:165–175
Ball G, Parton RM, Hamilton RS et al (2012) A Cell Biologist's Guide to High Resolution Imaging. Methods Enzymol 504:29–55
Huang B, Babcock H, Zhuang X (2010) Breaking the diffraction barrier: super-resolution imaging of cells. Cell 143:1047–1058
Neumann B, Held M, Liebel U et al (2006) High-throughput RNAi screening by time-lapse imaging of live human cells. Nat Methods 3:385–390
Wolinski H, Natter K, Kohlwein SD (2009) The fidgety yeast: focus on high-resolution live yeast cell microscopy. Methods Mol Biol 548:75–99
Wolinski H, Kohlwein SD (2008) Microscopic analysis of lipid droplet metabolism and dynamics in yeast. Methods Mol Biol 457:151–163
Fei W, Shui G, Gaeta B et al (2008) Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast. J Cell Biol 180:473–482
Li Z, Vizeacoumar FJ, Bahr S et al (2011) Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nat Biotechnol 29:361–367
Niu W, Hart GT, Marcotte EM (2011) High-throughput immunofluorescence microscopy using yeast spheroplast cell-based microarrays. Methods Mol Biol 706:83–95
Saito TL, Ohtani M, Sawai H et al (2004) SCMD: Saccharomyces cerevisiae Morphological Database. Nucleic Acids Res 32:D319–D322
Vizeacoumar FJ, van Dyk N, Vizeacoumar FS et al (2010) Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. J Cell Biol 188:69–81
Wolinski H, Petrovic U, Mattiazzi M et al (2009) Imaging-based live cell yeast screen identifies novel factors involved in peroxisome assembly. J Proteome Res 8:20–27
Bassett DE Jr, Boguski MS, Hieter P (1996) Yeast genes and human disease. Nature 379:589–590
Kohlwein SD (2000) The beauty of the yeast: live cell microscopy at the limits of optical resolution. Microsc Res Tech 51:511–529
Spandl J, White DJ, Peychl J et al (2009) Live cell multicolor imaging of lipid droplets with a new dye, LD540. Traffic 10:1579–1584
Greenspan P, Mayer EP, Fowler SD (1985) Nile red: a selective fluorescent stain for intracellular lipid droplets. J Cell Biol 100:965–973
Ivnitski-Steele I, Holmes AR, Lamping E et al (2009) Identification of Nile red as a fluorescent substrate of the Candida albicans ATP-binding cassette transporters Cdr1p and Cdr2p and the major facilitator superfamily transporter Mdr1p. Anal Biochem 394:87–91
Martin RM, Leonhardt H, Cardoso MC (2005) DNA labeling in living cells. Cytometry A 67:45–52
Rasband WS (2011) Image J, U. S. National Institutes of Health, Bethesda, Maryland, USA, http://imagej.nih.gov/ij/ .
Snapp EL, Altan N, Lippincott-Schwartz J (2003) Measuring protein mobility by photobleaching GFP chimeras in living cells. Curr Protoc Cell Biol, Chapter 21, Unit 21 21
Weiss M (2004) Challenges and artifacts in quantitative photobleaching experiments. Traffic 5:662–671
Diaspro A, Mazza D, Krol S et al (2005) Quantitative FRAP by means of diffusion through 3D polyelectrolyte shells using confocal and two-photon excitation approaches. Microsc Microanal 11:786–787
Mazza D, Cella F, Vicidomini G et al (2007) Role of three-dimensional bleach distribution in confocal and two-photon fluorescence recovery after photobleaching experiments. Appl Opt 46:7401–7411
Braeckmans K, Stubbe BG, Remaut K et al (2006) Anomalous photobleaching in fluorescence recovery after photobleaching measurements due to excitation saturation–a case study for fluorescein. J Biomed Opt 11:044013
Wallace W, Schaefer LH, Swedlow JR (2001) A workingperson's guide to deconvolution in light microscopy. Biotechniques 31:1076–1078, 1080, 1082 passim
Scientific Volume Imaging. Huygens Deconvolution Pro User Manual.
Landmann L (2002) Deconvolution improves colocalization analysis of multiple fluorochromes in 3D confocal data sets more than filtering techniques. J Microsc 208:134–147
Centonze V, Pawley JB (2006) Tutorial on practical confocal microscopy and use of the confocal test specimen. In: Pawley JB (ed) Handbook of Biological Confocal Microscopy 627–649. Springer, 3rd ed. 2006
Papadopulos F, Spinelli M, Valente S et al (2007) Common tasks in microscopic and ultrastructural image analysis using ImageJ. Ultrastruct Pathol 31:401–407
Acknowledgements
Work in the authors’ laboratories is supported by grants from the Austrian Science Funds FWF (project SFB Lipotox F3005 and the PhD program Molecular Enzymology W901-B12) and the Austrian Federal Ministry for Science and Research (project GOLD, in the framework of the Austrian Genomics Program, GEN-AU), and by NAWI Graz.
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Wolinski, H., Kohlwein, S.D. (2014). Single Yeast Cell Imaging. In: Smith, J., Burke, D. (eds) Yeast Genetics. Methods in Molecular Biology, vol 1205. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-1363-3_7
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DOI: https://doi.org/10.1007/978-1-4939-1363-3_7
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