Abstract
The widespread application of fluorescence microscopy to study live cells has led to a greater understanding of numerous biological processes. Many techniques have been developed to uniquely label structures and track metabolic pathways using fluorophores in live cells. However, the photochemistry of nonnative compounds and the deposition of energy into the cell during imaging can result in unexpected and unwanted side effects. Herein, we examine potential live cell damage by first discussing common imaging considerations and modalities in fluorescence microscopy. We then consider several mechanisms by which various photochemical and photophysical phenomena cause cellular damage and introduce techniques that have leveraged these phenomena to intentionally create damage inside cells. Reviewing conditions under which intentional damage occurs can allow one to better predict when unintentional damage may be important. Finally, we delineate ways of checking for and reducing photochemical and photophysical damage.
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Stephens DJ, Allan VJ (2003) Light microscopy techniques for live cell imaging. Science 300(5616):82–86. doi:10.1126/science.1082160
Lichtman JW, Conchello J-A (2005) Fluorescence microscopy. Nat Methods 2(12): 910–919
Giepmans BNG, Adams SR, Ellisman MH, Tsien RY (2006) The fluorescent toolbox for assessing protein location and function. Science 312(5771):217–224. doi:10.1126/science.1124618
Wombacher R, Cornish VW (2011) Chemical tags: applications in live cell fluorescence imaging. J Biophotonics 4(6):391–402. doi:10.1002/jbio.201100018
Davidovits P, Egger MD (1969) Scanning laser microscope. Nature 223(5208):831–831
Denk W, Strickler JH, Webb WW (1990) Two-photon laser scanning fluorescence microscopy. Science 248:73–76
Hopt A, Neher E (2001) Highly nonlinear photodamage in two-photon fluorescence microscopy. Biophys J 80:2029–2036
Zorov DB, Kobrinsky E, Juhaszova M, Sollott SJ (2004) Examining intracellular organelle function using fluorescent probes: from animalcules to quantum dots. Circ Res 95(3):239–252. doi:10.1161/01.RES.0000137875.42385.8e
Tsien RY (1998) The green fluorescent protein. Annu Rev Biochem 67(1):509–544. doi:10.1146/annurev.biochem.67.1.509
Baird GS, Zacharias DA, Tsien RY (2000) Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral. Proc Natl Acad Sci U S A 97(22):11984–11989. doi:10.1073/pnas.97.22.11984
Surrey T, Elowitz MB, Wolf P-E, Yang F, Fo N, Shokat K, Leibler S (1998) Chromophore-assisted light inactivation and self-organization of microtubules and motors. Proc Natl Acad Sci U S A 95(8):4293–4298
Remington SJ (2006) Fluorescent proteins: maturation, photochemistry and photophysics. Curr Opin Struct Biol 16(6):714–721. doi:10.1016/j.sbi.2006.10.001
Essers J, Vermeulen W, Houtsmuller AB (2006) DNA damage repair: anytime, anywhere? Curr Opin Cell Biol 18:240–246
Halliwell B, Aruoma OI (1991) DNA damage by oxygen-derived species its mechanism and measurement in mammalian systems. FEBS Lett 281:9–19. doi:10.1016/0014-5793(91)80347-6
Schweitzer C, Schmidt R (2003) Physical mechanisms of generation and deactivation of singlet oxygen. Chem Rev 103:1685–1757
Sies H (1993) Strategies of antioxidant defense. Eur J Biochem 215(2):213–219. doi:10.1111/j.1432-1033.1993.tb18025.x
Jacobson K, Rajfur Z, Vitriol E, Hahn K (2008) Chromophore-assisted laser inactivation in cell biology. Trends Cell Biol 18(9):443–450. doi:10.1016/j.tcb.2008.07.001
Ragàs X, Cooper LP, White JH, Nonell S, Flors C (2011) Quantification of photosensitized singlet oxygen production by a fluorescent protein. ChemPhysChem 12(1):161–165. doi:10.1002/cphc.201000919
Bulina ME, Lukyanov KA, Britanova OV, Onichtchouk D, Lukyanov S, Chudakov DM (2006) Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed. Nat Protoc 1(2):947–953
Limoli CL, Ward JF (1993) A new method for introducing double-strand breaks into cellular DNA. Radiat Res 134:160–169
Saran M, Bors W (1990) Radical reactions in vivo: an overview. Radiat Environ Biophys 29:249–262
Teoule R (1987) Radiation-induced DNA damage and its repair. Int J Radiat Biol 51(4): 573–589
Ward JF (1990) The yield of DNA double strand breaks produced intracellularly by ionizing radiation: a review. Int J Radiat Biol 57(6):1141–1150
Guo H, Tullius TD (2003) Gapped DNA is anisotropically bent. Proc Natl Acad Sci U S A 100(7):3743–3747
Siddiqi MA, Bothe E (1987) Single- and double-strand break formation in DNA irradiated in aqueous solution: dependence on dose and OH radical scavenger concentration. Radiat Res 112:449–463
Patrick MH, Rahn RO (1976) Photochemistry and photobiology of nucleic acids. Academic, New York
Houten BV, Croteau DL, Vecchia MJD, Wang H, Kisker C (2005) “Close-fitting sleeves”: DNA damage recognition by the UvrABC nuclease system. Mutat Res 577:92–117
Friedberg EC (2003) DNA damage and repair. Nature 421:436–440
Caldecott KW (2008) Single strand break repair and genetic disease. Nat Rev Genet 9:619–631
Akerman BTE (1996) Single- and double-strand photocleavage of DNA by YO, YOYO, and TOTO. Nucleic Acids Res 24:1080
Tycon MA, Dial CF, Faison K, Melvin W, Fecko CJ (2012) Quantification of dye-mediated photodamage during single-molecule DNA imaging. Anal Biochem 426(1):13–21. doi:10.1016/j.ab.2012.03.021
Robertson CA, Evans DH, Abrahamse H (2009) Photodynamic therapy (PDT): a short review on cellular mechanisms and cancer research applications for PDT. J Photochem Photobiol B 96(1):1–8. doi:10.1016/j.jphotobiol.2009.04.001
Zigler JSJ, Lepe-Zuniga J, Vistica B, Gery I (1985) Analysis of the cytotoxic effects of light-exposed hepes-containing culture medium. In Vitro Cell Dev Biol 21(5):282–287. doi:10.1007/bf02620943
Vogel A, Noack J, Hattman G, Paltauf G (2005) Mechanisms of femtosecond laser nanosurgery of cells and tissues. Appl Phys B 81(8):1015–1047. doi:10.1007/s00340-005-2036-6
Nguyen J, Ma Y, Luo T, Bristow RG, Jaffray DA, Lu Q (2011) Direct observation of ultrafast-electron-transfer reactions unravels high effectiveness of reductive DNA damage. Proc Natl Acad Sci U S A 108:11778
Pratt DA, Tallman KA, Porter NA (2011) Free radical oxidation of polyunsaturated lipids: new mechanistic insights and the development of peroxyl radical clocks. Acc Chem Res 44(6): 458–467. doi:10.1021/ar200024c
Fan CHSJLJP (2002) Breakdown threshold and localized electron density in water induced by ultrashort laser pulses. J Appl Phys 91: 2530–2536
Kong X, Mohanty SK, Stephens J, Heale JT, Gomez-Godinez V, Shi LZ, Kim J-S, Yokomori K, Berns MW (2009) Comparative analysis of different laser systems to study cellular responses to DNA damage in mammalian cells. Nucleic Acids Res 37:e68. doi:10.1093/nar/gkp221
König K, Riemann I, Fritzsche W (2001) Nanodissection of human chromosomes with near-infrared femtosecond laser pulses. Opt Lett 26(11):819–821
Supatto W, Debarre D, Moulia B, Brouzes E, Martin J-L, Farge E, Beaurepaire E (2005) In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses. Proc Natl Acad Sci U S A 102(4):1047–1052
Heisterkamp A, Maxwell IZ, Mazur E, Underwood JM, Nickerson JA, Kumar S, Ingber DE (2005) Pulse energy dependence of subcellular dissection by femtosecond laser pulses. Opt Express 13(10):3690–3696
Kuetemeyer K, Rezgui R, Lubatschowski H, Heisterkamp A (2010) Influence of laser parameters and staining on femtosecond laser-based intracellular nanosurgery. Biomed Opt Express 1(2):587–597
Vogel A, Venugopalan V (2003) Mechanisms of pulsed laser ablation of biological tissues. Chem Rev 103(2):577–644. doi:10.1021/cr010379n
Tycon MA, Chakraborty A, Fecko CJ (2011) Generation of DNA photolesions by two-photon absorption of a frequency-doubled Ti:sapphire laser. J Photochem Photobiol B 102(2):161–168
Daddysman MK, Fecko CJ (2011) DNA multiphoton absorption generates localized damage for studying repair dynamics in live cells. Biophys J 101(9):2294–2303
Meldrum RA, Botchway SW, Wharton CW, Hirst GJ (2003) Nanoscale spatial induction of ultraviolet photoproducts in cellular DNA by three-photon near-infrared absorption. EMBO Rep 4(12):1144–1149
Dinant C, Md J, Essers J, Cappellen WA, Kanaar R, Houtsmuller AB, Vermeulen W (2007) Activation of multiple DNA repair pathways by sub-nuclear damage induction methods. J Cell Sci 120:2731–2740
Trautlein D, Deibler M, Leitenstorfer A, Ferrando-May E (2010) Specific local induction of DNA strand breaks by infrared multi-photon absorption. Nucleic Acids Res 38(3):e14. doi:10.1093/nar/gkp932
König K (2001) Cellular response to laser radiation in fluorescence microscopes. In: Periasamy A (ed) Methods in cellular imaging. Oxford University Press, Oxford, pp 236–251
Tirlapur UK, Konig K, Peuckert C, Krieg R, Halbhuber K-J (2001) Femtosecond near-infrared laser pulses elicit generation of reactive oxygen species in mammalian cells leading to apoptosis-like death. Exp Cell Res 263: 88–97
König K, So PTC, Mantulin WW, Gratton E (1997) Cellular response to near-infrared femtosecond laser pulses in two-photon microscopes. Opt Lett 22(2):135–136
König K, Becker TW, Fischer P, Riemann I, Halbhuber KJ (1999) Pulse-length dependence of cellular response to intense near-infrared laser pulses in multiphoton microscopes. Opt Lett 24(2):113–115
Tirlapur UK, Konig K (2001) Femtosecond near-infrared laser pulse induced strand breaks in mammalian cells. Cell Mol Biol 47(18): OL131–OL134
Sacconi L, Dombeck DA, Webb WW (2006) Overcoming photodamage in second-harmonic generation microscopy: real-time optical recording of neuronal action potentials. Proc Natl Acad Sci U S A 103(9):3124–3129. doi:10.1073/pnas.0511338103
Altman RB, Terry DS, Zhou Z, Zheng Q, Geggier P, Kolster RA, Zhao Y, Javitch JA, Warren JD, Blanchard SC (2012) Cyanine fluorophore derivatives with enhanced photostability. Nat Methods 9(1):68–71
Mueller F, Mazza D, Stasevich TJ, McNally JG (2010) FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know? Curr Opin Cell Biol 22(3): 403–411. doi:10.1016/j.ceb.2010.03.002
Krichevsky O, Bonnet G (2002) Fluorescence correlation spectroscopy: the technique and its applications. Rep Prog Phys 65(2):251–297
Acknowledgment
Funding for this work was provided by the National Science Foundation under Grant No. PHY-1150017.
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Daddysman, M.K., Tycon, M.A., Fecko, C.J. (2014). Photoinduced Damage Resulting from Fluorescence Imaging of Live Cells. In: Cambridge, S. (eds) Photoswitching Proteins. Methods in Molecular Biology, vol 1148. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-0470-9_1
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DOI: https://doi.org/10.1007/978-1-4939-0470-9_1
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