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Identification of Host Factors of Paramyxoviruses by siRNA Genome-Wide Screens

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Measles and Related Morbilliviruses

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2808))

Abstract

Measles is a highly infectious disease that continues to spread mainly in developing countries, often resulting in child mortality. Despite the existence of effective vaccines, no specific antivirals are available as targeted therapy to combat measles virus (MeV). The implementation of genome-wide siRNA screens can provide a powerful platform to discover host factors that mediate MeV infection and replication, which could be essential to develop novel therapeutic strategies against this disease. Here, we describe a human genome-wide siRNA screen for MeV.

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References

  1. Rota PA, Moss WJ, Takeda M, de Swart RL, Thompson KM, Goodson JL (2016) Measles. Nat Rev Dis Primers 2:16049. https://doi.org/10.1038/nrdp.2016.49

    Article  PubMed  Google Scholar 

  2. Laksono BM, de Vries RD, McQuaid S, Duprex WP, de Swart RL (2016) Measles virus host invasion and pathogenesis. Viruses 8(8):210. https://doi.org/10.3390/v8080210

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Laksono BM, de Vries RD, Verburgh RJ, Visser EG, de Jong A, Fraaij PLA, Ruijs WLM, Nieuwenhuijse DF, van den Ham HJ, Koopmans MPG, van Zelm MC, Osterhaus A, de Swart RL (2018) Studies into the mechanism of measles-associated immune suppression during a measles outbreak in the Netherlands. Nat Commun 9(1):4944. https://doi.org/10.1038/s41467-018-07515-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Chopra M, Bhutta Z, Chang Blanc D, Checchi F, Gupta A, Lemango ET, Levine OS, Lyimo D, Nandy R, O’Brien KL, Okwo-Bele JM, Rees H, Soepardi J, Tolhurst R, Victora CG (2020) Addressing the persistent inequities in immunization coverage. Bull World Health Organ 98(2):146–148. https://doi.org/10.2471/BLT.19.241620

    Article  PubMed  Google Scholar 

  5. Cherry S (2009) What have RNAi screens taught us about viral-host interactions? Curr Opin Microbiol 12(4):446–452. https://doi.org/10.1016/j.mib.2009.06.002

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Cherry S, Doukas T, Armknecht S, Whelan S, Wang H, Sarnow P, Perrimon N (2005) Genome-wide RNAi screen reveals a specific sensitivity of IRES-containing RNA viruses to host translation inhibition. Genes Dev 19(4):445–452. https://doi.org/10.1101/gad.1267905

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Panda D, Cherry S (2012) Cell-based genomic screening: elucidating virus-host interactions. Curr Opin Virol 2(6):784–792. https://doi.org/10.1016/j.coviro.2012.10.007

    Article  CAS  PubMed  Google Scholar 

  8. Mohr SE, Smith JA, Shamu CE, Neumuller RA, Perrimon N (2014) RNAi screening comes of age: improved techniques and complementary approaches. Nat Rev Mol Cell Biol 15(9):591–600. https://doi.org/10.1038/nrm3860

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Anderson DE, Pfeffermann K, Kim SY, Sawatsky B, Pearson J, Kovtun M, Corcoran DL, Krebs Y, Sigmundsson K, Jamison SF, Yeo ZZJ, Rennick LJ, Wang LF, Talbot PJ, Duprex WP, Garcia-Blanco MA, von Messling V (2019) Comparative loss-of-function screens reveal ABCE1 as an essential cellular host factor for efficient translation of Paramyxoviridae and Pneumoviridae. mBio 10(3):e00826-19. https://doi.org/10.1128/mBio.00826-19

    Article  PubMed  PubMed Central  Google Scholar 

  10. Martin S, Chiramel AI, Schmidt ML, Chen YC, Whitt N, Watt A, Dunham EC, Shifflett K, Traeger S, Leske A, Buehler E, Martellaro C, Brandt J, Wendt L, Muller A, Peitsch S, Best SM, Stech J, Finke S, Romer-Oberdorfer A, Groseth A, Feldmann H, Hoenen T (2018) A genome-wide siRNA screen identifies a druggable host pathway essential for the Ebola virus life cycle. Genome Med 10(1):58. https://doi.org/10.1186/s13073-018-0570-1

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Panda D, Das A, Dinh PX, Subramaniam S, Nayak D, Barrows NJ, Pearson JL, Thompson J, Kelly DL, Ladunga I, Pattnaik AK (2011) RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses. Proc Natl Acad Sci USA 108(47):19036–19041. https://doi.org/10.1073/pnas.1113643108

    Article  PubMed  PubMed Central  Google Scholar 

  12. de Vries RD, Duprex WP, de Swart RL (2015) Morbillivirus infections: an introduction. Viruses 7(2):699–706. https://doi.org/10.3390/v7020699

    Article  PubMed  PubMed Central  Google Scholar 

  13. Hashimoto K, Ono N, Tatsuo H, Minagawa H, Takeda M, Takeuchi K, Yanagi Y (2002) SLAM (CD150)-independent measles virus entry as revealed by recombinant virus expressing green fluorescent protein. J Virol 76(3):6743–6749. https://doi.org/10.1128/jvi.76.13.6743-6749.2002

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Correspondence to Danielle E. Anderson .

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© 2024 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Yan, B., Sigmundsson, K., Ooi, Y.S., Anderson, D.E. (2024). Identification of Host Factors of Paramyxoviruses by siRNA Genome-Wide Screens. In: Ma, D.Z., Pfaller, C.K. (eds) Measles and Related Morbilliviruses. Methods in Molecular Biology, vol 2808. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3870-5_8

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  • DOI: https://doi.org/10.1007/978-1-0716-3870-5_8

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3869-9

  • Online ISBN: 978-1-0716-3870-5

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