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The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami

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DNA and RNA Origami

Abstract

This chapter introduces how to run molecular dynamics simulations for DNA origami using the oxDNA coarse-grained model.

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Acknowledgments

We are grateful for support from the EPSRC Centre for Doctoral training, Theory and Modelling in Chemical Sciences, under grant EP/L015722/1.

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Correspondence to Jonathan P. K. Doye .

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Doye, J.P.K. et al. (2023). The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami. In: Valero, J. (eds) DNA and RNA Origami. Methods in Molecular Biology, vol 2639. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3028-0_6

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  • DOI: https://doi.org/10.1007/978-1-0716-3028-0_6

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3027-3

  • Online ISBN: 978-1-0716-3028-0

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