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Multiplexed ISSR Genotyping by Sequencing (MIG-Seq)

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Plant Genotyping

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2638))

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Abstract

Multiplexed inter-simple sequence repeat (ISSR) genotyping by sequencing (MIG-seq) is a simple, rapid, and inexpensive method for detecting single-nucleotide polymorphisms (SNPs) using next-generation sequencing (NGS). The advantages of MIG-seq include easy application to various species without prior genetic information. In addition, this method opens the door to genome-wide nucleotide sequence analyses of low-quality and trace-level deoxyribonucleic acid (DNA) samples, which have previously been difficult to analyze. Another advantage is that the procedure is simple, time-saving, and inexpensive. Recently, MIG-seq has been applied to wild and cultivated plants and has produced novel results. Using invisible DNA information, questions related to gene flow through pollination and seed dispersal, the genetic structure and diversity of populations, clonality, and the hybridization of wild and cultivated plants are being rapidly answered. In this chapter, I present the results of plant research based on MIG-seq and describe the procedure for this method as a user of MIG-seq.

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Authors and Affiliations

  1. Graduate School of Science, Osaka Metropolitan University, Osaka, Japan

    Satoshi Nanami

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  1. Satoshi Nanami
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Correspondence to Satoshi Nanami .

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Editors and Affiliations

  1. College of Science and Engineering, Biological Sciences, Flinders University, Adelaide, SA, Australia

    Yuri Shavrukov

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Nanami, S. (2023). Multiplexed ISSR Genotyping by Sequencing (MIG-Seq). In: Shavrukov, Y. (eds) Plant Genotyping. Methods in Molecular Biology, vol 2638. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3024-2_29

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  • DOI: https://doi.org/10.1007/978-1-0716-3024-2_29

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  • Publisher Name: Humana, New York, NY

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