Abstract
Studied for more than a century, equilibrium liquid crystals provided insight into the properties of ordered materials, and led to commonplace applications such as display technology. Active nematics are a new class of liquid crystal materials that are driven out of equilibrium by continuous motion of the constituent anisotropic units. A versatile experimental realization of active nematic liquid crystals is based on rod-like cytoskeletal filaments that are driven out of equilibrium by molecular motors. We describe protocols for assembling microtubule-kinesin based active nematic liquid crystals and associated isotropic fluids. We describe the purification of each protein and the assembly process of a two-dimensional active nematic on a water–oil interface. Finally, we show examples of nematic formation and describe methods for quantifying their non-equilibrium dynamics.
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References
Wu H-Y, Nazockdast E, Shelley MJ, Needleman DJ (2017) Forces positioning the mitotic spindle: theories, and now experiments. BioEssays 39:1600212. https://doi.org/10.1002/bies.201600212
Needleman D, Dogic Z (2017) Active matter at the interface between materials science and cell biology. Nat Rev Mater 2:17048
Marchetti MC, Joanny JF, Ramaswamy S et al (2013) Hydrodynamics of soft active matter. Rev Mod Phys 85:1143–1189. https://doi.org/10.1103/RevModPhys.85.1143
Nédélec FJ, Surrey T, Maggs AC, Leibler S (1997) Self-organization of microtubules and motors. Nature 389:305–308. https://doi.org/10.1038/38532
Sanchez T, Chen DTN, Decamp SJ et al (2012) Spontaneous motion in hierarchically assembled active matter. Nature 491:431–434. https://doi.org/10.1038/nature11591
DeCamp SJ, Redner GS, Baskaran A et al (2015) Orientational order of motile defects in active nematics. Nat Mater 14:1110–1115. https://doi.org/10.1038/nmat4387
Duclos G, Adkins R, Banerjee D et al (2020) Topological structure and dynamics of three-dimensional active nematics. Science 367:1120–1124. https://doi.org/10.1126/science.aaz4547
Keber FC, Loiseau E, Sanchez T et al (2014) Topology and dynamics of active nematic vesicles. Science 345:1135–1139. https://doi.org/10.1126/science.1254784
Guillamat P, Ignés-Mullol J, Sagués F (2016) Control of active liquid crystals with a magnetic field. Proc Natl Acad Sci U S A 113:5498–5502. https://doi.org/10.1073/pnas.1600339113
Thampi SP, Golestanian R, Yeomans JM (2014) Instabilities and topological defects in active nematics. Europhys Lett 105:18001. https://doi.org/10.1209/0295-5075/105/18001
Opathalage A, Norton MM, Juniper MPN et al (2019) Self-organized dynamics and the transition to turbulence of confined active nematics. Proc Natl Acad Sci U S A 116:4788–4797. https://doi.org/10.1073/pnas.1816733116
Ellis PW, Pearce DJG, Chang YW et al (2018) Curvature-induced defect unbinding and dynamics in active nematic toroids. Nat Phys 14:85–90. https://doi.org/10.1038/NPHYS4276
Giomi L, Bowick MJ, Ma X, Marchetti MC (2013) Defect annihilation and proliferation in active Nematics. Phys Rev Lett 110:228101. https://doi.org/10.1103/PhysRevLett.110.228101
Narayan V, Ramaswamy S, Menon N (2007) Long-lived Giant number fluctuations in a swarming granular Nematic. Science 317:105–108. https://doi.org/10.1126/science.1140414
Wu K-T, Hishamunda JB, Chen DTN et al (2017) Transition from turbulent to coherent flows in confined three-dimensional active fluids. Science 355:eaal1979
Lemma LM, DeCamp SJ, You Z et al (2019) Statistical properties of autonomous flows in 2D active nematics. Soft Matter 15:3264–3272. https://doi.org/10.1039/C8SM01877D
Castoldi M, Popov AV (2003) Purification of brain tubulin through two cycles of polymerization- depolymerization in a high-molarity buffer. Protein Expr Purif 32:83–88. https://doi.org/10.1016/S1046-5928(03)00218-3
Hyman A, Drechsel D, Kellogg D et al (1991) Preparation of modified tubulins. Methods Enzymol 196:478–485
Hilitski F, Ward AR, Cajamarca L et al (2015) Measuring cohesion between macromolecular filaments one pair at a time: depletion-induced microtubule bundling. Phys Rev Lett 114:138102. https://doi.org/10.1103/PhysRevLett.114.138102
Chandrakar P, Berezney J, Lemma B et al (2018) Microtubule-based active fluids with improved lifetime, temporal stability and miscibility with passive soft materials. https://arxiv.org/abs/1811.05026
Hyman AA, Salser S, Drechsel DN et al (1992) Role of GTP hydrolysis in microtubule dynamics: information from a slowly hydrolyzable analogue, GMPCPP. Mol Biol Cell 3:1155–1167. https://doi.org/10.1091/mbc.3.10.1155
Sanchez T, Welch D, Nicastro D, Dogic Z (2011) Cilia-like beating of active microtubule bundles. Science 333:456–459. https://doi.org/10.1126/science.1203963
Berliner E, Mahtani HK, Karki S et al (1994) Microtubule movement by a biotinated kinesin bound to streptavidin-coated surface. J Biol Chem 269:8610–8615
Woehlke G, Schliwa M (2000) Walking on two heads: the many talents of kinesin. Nat Rev Mol Cell Biol 1:50–58. https://doi.org/10.1038/35036069
Huang TG, Hackney DD (1994) Drosophila kinesin minimal motor domain expressed in Escherichia coli. Purification and kinetic characterization. J Biol Chem 269:16493–16501
Gilbert SP, Johnson KA (1993) Expression, purification, and characterization of the Drosophila kinesin motor domain produced in Escherichia coli. Biochemistry 32:4677–4684. https://doi.org/10.1021/bi00068a028
Müller MJI, Klumpp S, Lipowsky R (2008) Tug-of-war as a cooperative mechanism for bidirectional cargo transport by molecular motors. Proc Natl Acad Sci U S A 105:4609–4614. https://doi.org/10.1073/pnas.0706825105
Lau AWC, Prasad A, Dogic Z (2009) Condensation of isolated semi-flexible filaments driven by depletion interactions. EPL 87:48006. https://doi.org/10.1209/0295-5075/87/48006
Schwarz-Linek J, Valeriani C, Cacciuto A et al (2012) Phase separation and rotor self-assembly in active particle suspensions. Proc Natl Acad Sci U S A 109:4052–4057. https://doi.org/10.1073/pnas.1116334109
Shribak M, Oldenbourg R (2003) Techniques for fast and sensitive measurements of two-dimensional birefringence distributions. Appl Opt 42:3009–3017. https://doi.org/10.1364/AO.42.003009
Purich DL, Kristofferson D (1984) Microtubule assembly: a review of Progress, principles, and perspectives. Adv Protein Chem 36:133–212
Henkin G, DeCamp SJ, Chen DTN et al (2014) Tunable dynamics of microtubule-based active isotropic gels. Phil Trans R Soc A 372:20140142. https://doi.org/10.1098/rsta.2014.0142
Schnitzer MJ, Block SM (1997) Kinesin hydrolyses one ATP per 8-nm step. Nature 388:386–390. https://doi.org/10.1038/41111
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Tayar, A.M., Lemma, L.M., Dogic, Z. (2022). Assembling Microtubule-Based Active Matter. In: Inaba, H. (eds) Microtubules. Methods in Molecular Biology, vol 2430. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1983-4_10
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DOI: https://doi.org/10.1007/978-1-0716-1983-4_10
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