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Hematopoietic Stem and Progenitor Cells (HSPCs)

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HIV Reservoirs

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2407))

Abstract

Cord blood is a readily available source of hematopoietic stem and progenitor cells (HSPCs) which can be infected with HIV-1 in vitro to produce inducible latently infected cells for reactivation studies. Infected HSPCs can also be found in the setting of clinically undetectable viremia in vivo. Here we describe an in vitro infection model utilizing cord blood derived HSPCs, as well as methods for isolating and characterizing provirus from bone marrow HSPCs from suppressed patients.

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References

  1. Carter CC, Onafuwa-Nuga A, McNamara LA, Riddell J, Bixby D, Savona MR, Collins KL (2010) HIV-1 infects multipotent progenitor cells causing cell death and establishing latent cellular reservoirs. Nat Med 16(4):446–451. https://doi.org/10.1038/nm.2109

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. McNamara LA, Ganesh JA, Collins KL (2012) Latent HIV-1 infection occurs in multiple subsets of hematopoietic progenitor cells and is reversed by NF-kappaB activation. J Virol 86(17):9337–9350. https://doi.org/10.1128/JVI.00895-12

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Zaikos TD, Painter MM, Sebastian NT, Terry VH, Collins KL (2018) Class 1-selective histone deacetylase inhibitors enhance HIV latency reversal while preserving the activity of HDAC isoforms necessary for maximal HIV gene expression. J Virol 92(6):e02110–e02117. https://doi.org/10.1128/JVI.02110-17

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Redd AD, Avalos A, Essex M (2007) Infection of hematopoietic progenitor cells by HIV-1 subtype C, and its association with anemia in southern Africa. Blood 110(9):3143–3149. https://doi.org/10.1182/blood-2007-04-086314

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Painter MM, Zaikos TD, Collins KL (2017) Quiescence promotes latent HIV infection and resistance to reactivation from latency with histone deacetylase inhibitors. J Virol 91(24):e01080-17. https://doi.org/10.1128/JVI.01080-17

    Article  PubMed  PubMed Central  Google Scholar 

  6. Carter CC, McNamara LA, Onafuwa-Nuga A, Shackleton M, Riddell J, Bixby D, Savona MR, Morrison SJ, Collins KL (2011) HIV-1 utilizes the CXCR4 chemokine receptor to infect multipotent hematopoietic stem and progenitor cells. Cell Host Microbe 9(3):223–234. https://doi.org/10.1016/j.chom.2011.02.005

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Collins KL, Chen BK, Kalams SA, Walker BD, Baltimore D (1998) HIV-1 Nef protein protects infected primary cells against killing by cytotoxic T lymphocytes. Nature 391(6665):397–401. https://doi.org/10.1038/34929

    Article  CAS  PubMed  Google Scholar 

  8. Sebastian NT, Zaikos TD, Terry V, Taschuk F, McNamara LA, Onafuwa-Nuga A, Yucha R, Signer RAJ, Riddell Iv J, Bixby D, Markowitz N, Morrison SJ, Collins KL (2017) CD4 is expressed on a heterogeneous subset of hematopoietic progenitors, which persistently harbor CXCR4 and CCR5-tropic HIV proviral genomes in vivo. PLoS Pathog 13(7):e1006509. https://doi.org/10.1371/journal.ppat.1006509

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Zaikos TD, Terry VH, Sebastian Kettinger NT, Lubow J, Painter MM, Virgilio MC, Neevel A, Taschuk F, Onafuwa-Nuga A, McNamara LA, Riddell J, Bixby D, Markowitz N, Collins KL (2018) Hematopoietic stem and progenitor cells are a distinct HIV reservoir that contributes to persistent viremia in suppressed patients. Cell Rep 25(13):3759–3773. e3759. https://doi.org/10.1016/j.celrep.2018.11.104

    Article  CAS  PubMed  Google Scholar 

  10. McNamara LA, Onafuwa-Nuga A, Sebastian NT, Riddell J, Bixby D, Collins KL (2013) CD133+ hematopoietic progenitor cells harbor HIV genomes in a subset of optimally treated people with long-term viral suppression. J Infect Dis 207(12):1807–1816. https://doi.org/10.1093/infdis/jit118

    Article  PubMed  PubMed Central  Google Scholar 

  11. Bui JK, Sobolewski MD, Keele BF, Spindler J, Musick A, Wiegand A, Luke BT, Shao W, Hughes SH, Coffin JM, Kearney MF, Mellors JW (2017) Proviruses with identical sequences comprise a large fraction of the replication-competent HIV reservoir. PLoS Pathog 13(3):e1006283. https://doi.org/10.1371/journal.ppat.1006283

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Zipursky A, Bow E, Seshadri RS, Brown EJ (1976) Leukocyte density and volume in normal subjects and in patients with acute lymphoblastic leukemia. Blood 48(3):361–371

    Article  CAS  PubMed  Google Scholar 

  13. Salvi R, Garbuglia AR, Di Caro A, Pulciani S, Montella F, Benedetto A (1998) Grossly defective nefgene sequences in a human immunodeficiency virus type 1-seropositive long-term nonprogressor. J Virol 72 (5):3646–3657

    Google Scholar 

  14. Bailey JR, Sedaghat AR, Kieffer T, Brennan T, Lee PK, Wind-Rotolo M, Haggerty CM,Kamireddi AR, Liu Y, Lee J, Persaud D, Gallant JE, Cofrancesco J, Jr., QuinnTC, Wilke CO, Ray SC, Siliciano JD, Nettles RE, Siliciano RF (2006) Residualhuman immunodeficiency virus type 1 viremia in some patients on antiretroviraltherapy is dominated by a small number of invariant clones rarely found incirculating CD4+ T cells. J Virol 80 (13):6441–6457

    Google Scholar 

  15. AñezM, Putonti C, Fox GE, Fofanov Y, Willson RC (2008) Exhaustive computationalidentification of pathogen sequences far-distant from background genomes:Identification and experimental verification of human-blind dengue PCR primers.J Biotechnol 133 (3):267–276. https://doi.org/10.1016/j.jbiotec.2007.09.007

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Correspondence to Kathleen L. Collins .

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Terry, V.H., Zimmerman, G.E., Virgilio, M.C., Painter, M.M., Bixby, D., Collins, K.L. (2022). Hematopoietic Stem and Progenitor Cells (HSPCs). In: Poli, G., Vicenzi, E., Romerio, F. (eds) HIV Reservoirs. Methods in Molecular Biology, vol 2407. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1871-4_11

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  • DOI: https://doi.org/10.1007/978-1-0716-1871-4_11

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1870-7

  • Online ISBN: 978-1-0716-1871-4

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