Skip to main content

Multi-Pronged Investigation of Volatile Compound-Mediated Interactions of Fusarium oxysporum with Plants, Fungi, and Bacteria

  • Protocol
  • First Online:
Fusarium wilt

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2391))

Abstract

Proteins and many biogenic compounds require water as a medium for movement. However, because volatile compounds (VCs) can travel through the air and porous soils due to their ability to vaporize at ambient temperature, they can mediate diverse intra- and inter-kingdom interactions and perform ecologically functions even in the absence of water. Here, we describe several tools and approaches for investigating how Fusarium oxysporum interacts with plants and other microbes through VCs and how VC-mediated interactions affect its ecology and pathology. We also present a method for capturing F. oxysporum VCs for analysis via gas chromatography linked to mass spectrometry.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Kang S, Demers J, del Mar Jimenez-Gasco M et al (2014) Fusarium oxysporum. In: Dean RA, Lichens-Park A, Kole C (eds) Genomics of plant-associated fungi and oomycetes: dicot pathogens. Springer, Berlin, pp 99–119

    Google Scholar 

  2. Gordon TR, Martyn RD (1997) The evolutionary biology of Fusarium oxysporum. Annu Rev Phytopathol 35:111–128

    Article  CAS  Google Scholar 

  3. Benhamou N, Garand C, Goulet A (2002) Ability of nonpathogenic Fusarium oxysporum strain Fo47 to induce resistance against Pythium ultimum infection in cucumber. Appl Environ Microbiol 68:4044–4060

    Article  CAS  Google Scholar 

  4. Nucci M, Anaissie E (2007) Fusarium infections in immunocompromised patients. Clin Microbiol Rev 20:695–704

    Article  CAS  Google Scholar 

  5. Husaini AM, Sakina A, Cambay SR (2018) Host–pathogen interaction in Fusarium oxysporum infections: where do we stand? Mol Plant-Microbe Interact 31:889–898

    Article  CAS  Google Scholar 

  6. del Rosario Cappellari L, Chiappero J, Banchio E (2019) Invisible signals from the underground: a practical method to investigate the effect of microbial volatile organic compounds emitted by rhizobacteria on plant growth. Biochem Mol Biol Educ 47:388–393

    Article  Google Scholar 

  7. Kesselmeier J, Staudt M (1999) Biogenic volatile organic compounds (VOC): an overview on emission, physiology and ecology. J Atmos Chem 33:23–88

    Article  CAS  Google Scholar 

  8. Schulz-Bohm K, Martín-Sánchez L, Garbeva P (2017) Microbial volatiles: small molecules with an important role in intra- and inter-kingdom interactions. Front Microbiol 8:2484

    Article  Google Scholar 

  9. Schulz-Bohm K, Gerards S, Hundscheid M et al (2018) Calling from distance: attraction of soil bacteria by plant root volatiles. ISME J 12:1252–1262

    Article  CAS  Google Scholar 

  10. Erb M (2018) Volatiles as inducers and suppressors of plant defense and immunity — origins, specificity, perception and signaling. Curr Opin Plant Biol 44:117–121

    Article  CAS  Google Scholar 

  11. Das A, Lee SH, Hyun TK et al (2013) Plant volatiles as method of communication. Plant Biotechnol Rep 7:9–26

    Article  Google Scholar 

  12. Kant MR, Bleeker PM, Wijk MVAN et al (2009) Plant volatiles in defence. Adv Bot Res 51:613–666

    Article  CAS  Google Scholar 

  13. Dudareva N, Negre F, Nagegowda DA et al (2006) Plant volatiles: recent advances and future perspectives. Crit Rev Plant Sci 25:417–440

    Article  CAS  Google Scholar 

  14. Law JH, Regnier FE (1971) Pheromones. Annu Rev Biochem 40:533–548

    Article  CAS  Google Scholar 

  15. Bitas V, Kim H-S, Bennett JW et al (2013) Sniffing on microbes: diverse roles of microbial volatile organic compounds in plant health. Mol Plant-Microbe Interact 26:835–843

    Article  CAS  Google Scholar 

  16. Effmert U, Kalderás J, Warnke R et al (2012) Volatile mediated interactions between bacteria and fungi in the soil. J Chem Ecol 38:665–703

    Article  CAS  Google Scholar 

  17. Audrain B, Farag MA, Ryu C-M et al (2015) Role of bacterial volatile compounds in bacterial biology. FEMS Microbiol Rev 39:222–233

    Article  CAS  Google Scholar 

  18. Chernin L, Toklikishvili N, Ovadis M et al (2011) Quorum-sensing quenching by rhizobacterial volatiles. Environ Microbiol Rep 3:698–704

    Article  CAS  Google Scholar 

  19. Li N, Alfiky A, Vaughan MM et al (2016) Stop and smell the fungi: fungal volatile metabolites are overlooked signals involved in fungal interaction with plants. Fungal Biol Rev 30:134–144

    Article  Google Scholar 

  20. Piechulla B, Lemfack MC, Kai M (2017) Effects of discrete bioactive microbial volatiles on plants and fungi. Plant Cell Environ 40:2042–2067

    Article  CAS  Google Scholar 

  21. Sharifi R, Ryu CM (2018) Sniffing bacterial volatile compounds for healthier plants. Curr Opin Plant Biol 44:88–97

    Article  CAS  Google Scholar 

  22. Bitas V, McCartney N, Li N et al (2015) Fusarium oxysporum volatiles enhance plant growth via affecting auxin transport and signaling. Front Microbiol 6:1248

    Article  Google Scholar 

  23. Minerdi D, Bossi S, Gullino ML et al (2009) Volatile organic compounds: a potential direct long-distance mechanism for antagonistic action of Fusarium oxysporum strain MSA 35. Environ Microbiol 11:844–854

    Article  CAS  Google Scholar 

  24. Minerdi D, Bossi S, Maffei ME et al (2011) Fusarium oxysporum and its bacterial consortium promote lettuce growth and expansin A5 gene expression through microbial volatile organic compound (MVOC) emission. FEMS Microbiol Ecol 76:342–351

    Article  CAS  Google Scholar 

  25. Li N, Alfiky A, Wang W et al (2018) Volatile compound-mediated recognition and inhibition between Trichoderma biocontrol agents and Fusarium oxysporum. Front Microbiol 9:1–16

    Article  Google Scholar 

  26. Medina-Romero YM, Roque-Flores G, Macías-Rubalcava ML (2017) Volatile organic compounds from endophytic fungi as innovative postharvest control of Fusarium oxysporum in cherry tomato fruits. Appl Microbiol Biotechnol 101:8209–8222

    Article  CAS  Google Scholar 

  27. Li N, Islam MT, Kang S (2019) Secreted metabolite-mediated interactions between rhizosphere bacteria and Trichoderma biocontrol agents. PLoS One 14:e0227228

    Article  CAS  Google Scholar 

  28. Li N, Kang S (2018) Do volatile compounds produced by Fusarium oxysporum and Verticillium dahliae affect stress tolerance in plants? Mycology 69:166–175

    Article  Google Scholar 

  29. Hoagland DR, Arnon DI (1950) The water-culture method for growing plants without soil. Calif Agric Exp Stn Circ 347:1–32

    Google Scholar 

  30. Kai M, Piechulla B (2009) Plant growth promotion due to rhizobacterial volatiles - an effect of CO2? FEBS Lett 583:3473–3477

    Article  CAS  Google Scholar 

  31. Wenke K, Wanke D, Kilian J et al (2012) Volatiles of two growth-inhibiting rhizobacteria commonly engage AtWRKY18 function. Plant J 70:445–459

    Article  CAS  Google Scholar 

  32. Kwon YS, Ryu C-M, Lee S et al (2010) Proteome analysis of Arabidopsis seedlings exposed to bacterial volatiles. Planta 232:1355–1370

    Article  CAS  Google Scholar 

  33. Hiscox JD, Israelstam GF (1979) A method for the extraction of chlorophyll from leaf tissue without maceration. Can J Bot 57:1332–1334

    Article  CAS  Google Scholar 

  34. Wang W, Li N, Liu X et al (2019) I plate-based assay for studying how fungal volatile compounds (VCs) affect plant growth and development and the identification of VCs via SPME-GC-MS. Bio-Protocol 9:e3166

    PubMed  PubMed Central  Google Scholar 

  35. Kellogg J, Kang S (2020) Metabolomics, an essential tool in exploring and harnessing microbial chemical ecology. Phytobiomes J 4:195–210

    Article  Google Scholar 

  36. Baba T, Ara T, Hasegawa M et al (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2:2006.0008

    Article  Google Scholar 

Download references

Acknowledgments

The protocols and systems described here have been developed using support from the USDA Specialty Crop Multi-State Program (AM170200XXXXG006), the USDA National Institute of Food and Agriculture and Federal Appropriations (Project PEN04655; Accession # 1016291), the Chinese Academy of Sciences President’s International Fellowship Initiative (Grant # 2019VCA0022), and the Brian Pool program of the National Research Foundation of Korea (Grant # 2019H1D3A2A01054562).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Seogchan Kang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Li, N., Kang, S. (2022). Multi-Pronged Investigation of Volatile Compound-Mediated Interactions of Fusarium oxysporum with Plants, Fungi, and Bacteria. In: Coleman, J. (eds) Fusarium wilt. Methods in Molecular Biology, vol 2391. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1795-3_10

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-1795-3_10

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1794-6

  • Online ISBN: 978-1-0716-1795-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics