Abstract
The protein array is a powerful platform to study humoral responses to infectious agents using small sample volumes [<3 μL]. Its success can be largely attributed to the development of new strategies for high-throughput cloning and expression, and improved manufacturing techniques for the construction of arrays. Here, we describe a method to hybridize protein arrays with malaria patients’ sera in order to identify seroreactive antigens, some of which may have a high potential of conferring protection from severe forms of malaria.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Vetter V, Denizer G, Friedland LR, Krishnan J, Shapiro M (2018) Understanding modern-day vaccines: what you need to know. Ann Med 50(2):110–120
Vigil A, Ortega R, Jain A, Nakajima-Sasaki R, Tan X, Chomel BB et al (2010) Identification of the feline humoral immune response to Bartonella henselae infection by protein microarray. PLoS One 5(7):e11447
Felgner PL, Roestenberg M, Liang L, Hung C, Jain A, Pablo J et al (2013) Pre-erythrocytic antibody profiles induced by controlled human malaria infections in healthy volunteers under chloroquine prophylaxis. Sci Rep 3:3549
Arévalo-Herrera M, Lopez-Perez M, Dotsey E, Jain A, Rubiano K, Felgner PL et al (2016) Antibody profiling in naïve and semi-immune individuals experimentally challenged with Plasmodium vivax sporozoites. PLoS Negl Trop Dis 10(3):e0004563
Uplekar S, Rao PN, Ramanathapuram L, Awasthi V, Verma K, Sutton P et al (2017) Characterizing antibody responses to Plasmodium vivax and Plasmodium falciparum antigens in India using genome-scale protein microarrays. PLoS Negl Trop Dis 11(1):e0005323
Yu X, Petritis B, LaBaer J (2016) Advancing translational research with next-generation protein microarrays. Proteomics 16(8):1238–1250
Natesan M, Ulrich RG (2010) Protein microarrays and biomarkers of infectious disease. Int J Mol Sci 11(12):5165–5183
Kamuyu G, Tuju J, Kimathi R, Mwai K, Mburu J, Kibinge N et al (2018) KILchip v1.0: a novel Plasmodium falciparum Merozoite protein microarray to facilitate malaria vaccine candidate prioritization. Front Immunol 9:2866
Davies DH, Duffy P, Bodmer J-L, Felgner PL, Doolan DL (2015) Large screen approaches to identify novel malaria vaccine candidates. Vaccine 33(52):7496–7505
Baum E, Sattabongkot J, Sirichaisinthop J, Kiattibutr K, Davies DH, Jain A et al (2015) Submicroscopic and asymptomatic Plasmodium falciparum and Plasmodium vivax infections are common in western Thailand - molecular and serological evidence. Malar J 14:95
King CL, Davies DH, Felgner P, Baum E, Jain A, Randall A et al (2015) Biosignatures of exposure/transmission and immunity. Am J Trop Med Hyg 93(3 Suppl):16–27
Vigil A, Chen C, Jain A, Nakajima-Sasaki R, Jasinskas A, Pablo J et al (2011) Profiling the humoral immune response of acute and chronic Q fever by protein microarray. Mol Cell Proteomics 10(10):M110.006304
Huw Davies D, Jain A, Nakajima R, Liang L, Jasinskis A, Supnet M et al (2016) Serodiagnosis of acute typhoid fever in Nigerian pediatric cases by detection of serum IgA and IgG against hemolysin E and lipopolysaccharide. Am J Trop Med Hyg 95(2):431–439
Olaya-Abril A, Jiménez-Munguía I, Gómez-Gascón L, Obando I, Rodríguez-Ortega MJ (2015) A pneumococcal protein array as a platform to discover serodiagnostic antigens against infection. Mol Cell Proteomics 4(10):2591–2608
Felgner J, Juarez S, Hung C, Liang L, Jain A, Döşkaya M et al (2015) Identification of Toxoplasma gondii antigens associated with different types of infection by serum antibody profiling. Parasitology 142(6):827–838
Cook EA, He M (2014) Preparation of protein arrays using cell-free protein expression. Methods Mol Biol (Clifton, NJ) 1118:245–255
Davies DH, Liang X, Hernandez JE, Randall A, Hirst S, Mu Y et al (2005) Profiling the humoral immune response to infection by using proteome microarrays: high-throughput vaccine and diagnostic antigen discovery. Proc Natl Acad Sci U S A 102(3):547–552
Liang L, Felgner PL (2015) A systems biology approach for diagnostic and vaccine antigen discovery in tropical infectious diseases. Curr Opin Infect Dis 28(5):438–445
Venkatesh A, Jain A, Davies H, Periera L, Maki JN, Gomes E et al (2019) Hospital-derived antibody profiles of malaria patients in Southwest India. Malar J 18(1):138
Sharon D, Snyder M (2014) Serum profiling using protein microarrays to identify disease related antigens. Methods Mol Biol 1176:169–178
Acknowledgments
Authors would like to acknowledge MHRD-UAY [Uchhatar AvishkarYojana] project #UAY2017/19/IITB_001 to S.S. for proteomics work and microarray support at IIT Bombay. A.V. was supported by the CSIR fellowship, India. Microarray chips were supported by the US NIAID MESA-ICEMR Program Project U19 AI089688 to P.K.R. of the University of Washington, Seattle, WA, USA. We would like to thank all the study participants at the Goa Medical College and Hospital and Dr. Sachin Shinde, Special Secretary of Health in the Government of Goa and Administrator of GMC, for his support. Rashmi Das and Anjali Mascharenhas from MESA ICEMR at Goa Medical College and Hospital managed sample distribution. John White and Laura Chery from the Department of Chemistry and Department of Global Health, University of Washington, Seattle, provided scientific and operations oversight.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Venkatesh, A. et al. (2021). Protein Arrays for the Identification of Seroreactive Protein Markers for Infectious Diseases. In: Barderas, R., LaBaer, J., Srivastava, S. (eds) Protein Microarrays for Disease Analysis. Methods in Molecular Biology, vol 2344. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1562-1_10
Download citation
DOI: https://doi.org/10.1007/978-1-0716-1562-1_10
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-1561-4
Online ISBN: 978-1-0716-1562-1
eBook Packages: Springer Protocols