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Biochemical Characterization of GPCR–G Protein Complex Formation

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Structure and Function of Membrane Proteins

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2302))

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Abstract

The complex of G protein-coupled receptors (GPCR) and G proteins is the core assembly in GPCR signaling in eukaryotes. With the recent development of cryo-electron microscopy, there has been a rapid growth in structures of GPCR–G protein complexes solved to near-atomic resolution, giving important insights into this signaling complex. Here we describe the biochemical protocol to study the interaction between GPCRs and G proteins before preparation of GPCR–G protein complexes for structural studies. We use gel filtration to analyze the binding properties between GPCR and G protein with the presence of agonist or antagonist, as well as the complex dissociation in the presence of GTP analogue. Methods used in the protocol are affinity purification and gel filtration, which are also commonly used in protein sample preparation for structural work. Therefore, the protocol can be easily adapted for large-scale sample preparation.

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References

  1. Stevens RC, Cherezov V, Katritch V et al (2013) The GPCR network: a large-scale collaboration to determine human GPCR structure and function. Nat Rev Drug Discov 12:25–34. https://doi.org/10.1038/nrd3859

    Article  CAS  PubMed  Google Scholar 

  2. Pándy-Szekeres G, Munk C, Tsonkov TM et al (2018) GPCRdb in 2018: adding GPCR structure models and ligands. Nucleic Acids Res 46:D440–D446. https://doi.org/10.1093/nar/gkx1109

    Article  CAS  PubMed  Google Scholar 

  3. Hilger D, Masureel M, Kobilka BK (2018) Structure and dynamics of GPCR signaling complexes. Nat Struct Mol Biol 25:4–12. https://doi.org/10.1038/s41594-017-0011-7

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Kühlbrandt W (2014) Biochemistry. The resolution revolution. Science 343:1443–1444. https://doi.org/10.1126/science.1251652

    Article  PubMed  Google Scholar 

  5. Bai X, McMullan G, Scheres SH (2015) How cryo-EM is revolutionizing structural biology. Trends Biochem Sci 40:49–57. https://doi.org/10.1016/j.tibs.2014.10.005

    Article  CAS  PubMed  Google Scholar 

  6. Zhao DY, Pöge M, Morizumi T et al (2019) Cryo-EM structure of the native rhodopsin dimer in nanodiscs. J Biol Chem 294:14215–14230. https://doi.org/10.1074/jbc.RA119.010089

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Koehl A, Hu H, Feng D et al (2019) Structural insights into the activation of metabotropic glutamate receptors. Nature 566:79–84. https://doi.org/10.1038/s41586-019-0881-4

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Liang Y-L, Khoshouei M, Radjainia M et al (2017) Phase-plate cryo-EM structure of a class B GPCR–G-protein complex. Nature:1–18. https://doi.org/10.1038/nature22327

  9. Zhang Y, Sun B, Feng D et al (2017) Cryo-EM structure of the activated GLP-1 receptor in complex with a G protein. Nature 546:248–253. https://doi.org/10.1038/nature22394

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Liang Y-L, Khoshouei M, Glukhova A et al (2018) Phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex. Nature 555:121–125. https://doi.org/10.1038/nature25773

    Article  CAS  PubMed  Google Scholar 

  11. García-Nafría J, Lee Y, Bai X et al (2018) Cryo-EM structure of the adenosine A2A receptor coupled to an engineered heterotrimeric G protein. elife 7:e35946. https://doi.org/10.7554/eLife.35946

    Article  PubMed  PubMed Central  Google Scholar 

  12. Koehl A, Hu H, Maeda S et al (2018) Structure of the μ opioid receptor-G i protein complex. Nature 558:1–23. https://doi.org/10.1038/s41586-018-0219-7

    Article  CAS  Google Scholar 

  13. Kang Y, Kuybeda O, de Waal PW et al (2018) Cryo-EM structure of human rhodopsin bound to an inhibitory G protein. Nature 558:553–558. https://doi.org/10.1038/s41586-018-0215-y

    Article  CAS  PubMed  Google Scholar 

  14. Draper-Joyce CJ, Khoshouei M, Thal DM et al (2018) Structure of the adenosine-bound human adenosine A1 receptor–Gi complex. Nature 558:559–563. https://doi.org/10.1038/s41586-018-0236-6

    Article  CAS  PubMed  Google Scholar 

  15. García-Nafría J, Nehmé R, Edwards PC, Tate CG (2018) Cryo-EM structure of the serotonin 5-HT1B receptor coupled to heterotrimeric Go. Nature 558:620–623. https://doi.org/10.1038/s41586-018-0241-9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Liang Y-L, Khoshouei M, Deganutti G et al (2018) Cryo-EM structure of the active, Gs-protein complexed, human CGRP receptor. Nature 561:492–497. https://doi.org/10.1038/s41586-018-0535-y

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Krishna Kumar K, Shalev-Benami M, Robertson MJ et al (2019) Structure of a signaling cannabinoid receptor 1-G protein complex. Cell:1–11. https://doi.org/10.1016/J.CELL.2018.11.040

  18. Zhao L-H, Ma S, Sutkeviciute I et al (2019) Structure and dynamics of the active human parathyroid hormone receptor-1. Science 364:148–153. https://doi.org/10.1126/science.aav7942

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Maeda S, Qu Q, Robertson MJ et al (2019) Structures of the M1 and M2 muscarinic acetylcholine receptor/G-protein complexes. Science 364:552–557. https://doi.org/10.1126/science.aaw5188

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Qi X, Liu H, Thompson B et al (2019) Cryo-EM structure of oxysterol-bound human smoothened coupled to a heterotrimeric Gi. Nature. https://doi.org/10.1038/s41586-019-1286-0

  21. Kato HE, Zhang Y, Hu H et al (2019) Conformational transitions of a neurotensin receptor 1-Gi1 complex. Nature 572:80–85. https://doi.org/10.1038/s41586-019-1337-6

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Tsai C-J, Marino J, Adaixo R et al (2019) Cryo-EM structure of the rhodopsin-Gαi-βγ complex reveals binding of the rhodopsin C-terminal tail to the gβ subunit. elife 8:547919. https://doi.org/10.7554/eLife.46041

    Article  Google Scholar 

  23. Gao Y, Hu H, Ramachandran S et al (2019) Structures of the rhodopsin-transducin complex: insights into G-protein activation. Mol Cell 75:781–790.e3. https://doi.org/10.1016/j.molcel.2019.06.007

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Zhao P, Liang Y-L, Belousoff MJ et al (2020) Activation of the GLP-1 receptor by a non-peptidic agonist. Nature 577:432–436. https://doi.org/10.1038/s41586-019-1902-z

    Article  CAS  PubMed  Google Scholar 

  25. Yin W, Li Z, Jin M et al (2019) A complex structure of arrestin-2 bound to a G protein-coupled receptor. Cell Res 29:971–983. https://doi.org/10.1038/s41422-019-0256-2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Nguyen AH, Thomsen ARB, Cahill TJ et al (2019) Structure of an endosomal signaling GPCR–G protein–β-arrestin megacomplex. Nat Struct Mol Biol 26:1123–1131. https://doi.org/10.1038/s41594-019-0330-y

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Simon MI, Strathmann MP, Gautam N (1991) Diversity of G proteins in signal transduction. Science 252:802–808. https://doi.org/10.1126/science.1902986

    Article  CAS  PubMed  Google Scholar 

  28. Flock T, Hauser AS, Lund N et al (2017) Selectivity determinants of GPCR-G-protein binding. Nature 545:317–322. https://doi.org/10.1038/nature22070

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Deupi X, Edwards P, Singhal A et al (2012) Stabilized G protein binding site in the structure of constitutively active metarhodopsin-II. Proc Natl Acad Sci 109:119–124. https://doi.org/10.1073/pnas.1114089108

    Article  PubMed  Google Scholar 

  30. Sun D, Flock T, Deupi X et al (2015) Probing Gα i1 protein activation at single-amino acid resolution. Nat Struct Mol Biol 22:686–694. https://doi.org/10.1038/nsmb.3070

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Maeda S, Sun D, Singhal A et al (2014) Crystallization scale preparation of a stable GPCR signaling complex between constitutively active rhodopsin and G-protein. PLoS One 9:e98714. https://doi.org/10.1371/journal.pone.0098714

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Molday LL, Molday RS (2014) 1D4: a versatile epitope tag for the purification and characterization of expressed membrane and soluble proteins. Methods Mol Biol 1177:1–15. https://doi.org/10.1007/978-1-4939-1034-2_1

    Article  PubMed  PubMed Central  Google Scholar 

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Correspondence to Ching-Ju Tsai .

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Pamula, F., Tsai, CJ. (2021). Biochemical Characterization of GPCR–G Protein Complex Formation. In: Schmidt-Krey, I., Gumbart, J.C. (eds) Structure and Function of Membrane Proteins. Methods in Molecular Biology, vol 2302. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1394-8_3

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  • DOI: https://doi.org/10.1007/978-1-0716-1394-8_3

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1393-1

  • Online ISBN: 978-1-0716-1394-8

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