Abstract
Integral membrane proteins are important drug targets that are critical in supporting many biological processes. Despite that, the study of their structure–function relationships remains a major goal in structural biology, yet progress has been hampered by inherent challenges in the production for stable and homogeneous protein samples. Dynamic light scattering provides a straightforward probe of protein quality in solution, particularly in relation to stability and aggregation. However, the necessity to use large amounts of sample and the low-throughput nature of the analysis remain as major bottlenecks of the technique.
Here, we present a protocol for dynamic light scattering measurements that are executed in a fully automated fashion for low-volume samples, in situ. The protocol offers a generic pre-screening method for downstream structural studies of biomolecules using higher-resolution approaches such as X-ray crystallography, electron microscopy, small-angle X-ray scattering, and NMR .
Key words
- Dynamic light scattering
- Membrane proteins and biophysics
- Biomembrane interfaces
- Biomolecules
- Protein solubility and aggregation
- Crystal nucleation
- Monodispersity
- Hydrodynamic radius
This is a preview of subscription content, access via your institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Sanders CR, Myers JK (2004) Disease-related misassembly of membrane proteins. Annu Rev Biophys Biomol Struct 33:25–51
Reis R, Moraes I (2019) Structural biology and structure–function relationships of membrane proteins. Biochem Soc Trans 47:47–61
Kwan TO, Reis R, Siligardi G, Hussain R, Cheruvara H, Moraes I (2019) Selection of biophysical methods for characterisation of membrane proteins. Int J Mol 20:2605
Birch J, Axford D, Foadi J, Meyer A, Eckardt A, Thielmann Y, Moraes I (2018) The fine art of integral membrane protein crystallisation. Methods 147:150–162
Meyer A, Dierks K, Hussein R, Brillet K, Brognaro H, Betzel C (2015) Systematic analysis of protein–detergent complexes applying dynamic light scattering to optimize solutions for crystallization trials. Acta Crystallogr F Struct Biol Cryst Commun 71:75–81
Stetefeld J, McKenna SA, Patel TR (2016) Dynamic light scattering: a practical guide and applications in biomedical sciences. Biophys Rev 8:409–427
Lorber B, Fischer F, Bailly M, Roy H, Kern D (2012) Protein analysis by dynamic light scattering: methods and techniques for students. Biochem Mol Biol Educ 40:372–382
Jachimska B, Wasilewska M, Adamczyk Z (2008) Characterization of globular protein solutions by dynamic light scattering, electrophoretic mobility, and viscosity measurements. Langmuir 24:6866–6872
Murphy RM (1997) Static and dynamic light scattering of biological macromolecules: what can we learn? Curr Opin Biotecnhol 8:25–30
Aivaliotis M, Samolis P, Neofotistou E, Remigy H, Rizos AK, Tsiotis G (2003) Molecular size determination of a membrane protein in surfactants by light scattering. Biochim Biophys Acta Biomembr 1615:69–76
Pos KM, Diederichs K (2002) Purification, crystallization and preliminary diffraction studies of AcrB, an inner-membrane multi-drug efflux protein. Acta Crystallogr D Biol Crystallogr 58:1865–1867
Veesler D, Blangy S, Cambillau C, Sciara G (2008) There is a baby in the bath water: AcrB contamination is a major problem in membrane-protein crystallization. Acta Crystallogr F Biol Crystallogr Commun 64:880–885
Acknowledgments
We acknowledge funding from the United Kingdom’s Department of Business, Energy and Industrial Strategy (BEIS).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Kwan, T.O.C., Reis, R., Moraes, I. (2021). In Situ Measurements of Polypeptide Samples by Dynamic Light Scattering: Membrane Proteins, a Case Study. In: Ryadnov, M. (eds) Polypeptide Materials. Methods in Molecular Biology, vol 2208. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0928-6_13
Download citation
DOI: https://doi.org/10.1007/978-1-0716-0928-6_13
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-0927-9
Online ISBN: 978-1-0716-0928-6
eBook Packages: Springer Protocols