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DNA Vaccines pp 167–192Cite as

Scale-Up of Plasmid DNA Downstream Process Based on Chromatographic Monoliths

Part of the Methods in Molecular Biology book series (MIMB,volume 2197)

Abstract

Purification of high-quality plasmid DNA in large quantities is a crucial step in its production for therapeutic use and is usually conducted by different chromatographic techniques. Large-scale preparations require the optimization of yield and homogeneity, while maximizing removal of contaminants and preserving molecular integrity. The advantages of Convective Interaction Media® (CIM®) monolith stationary phases, including low backpressure, fast separation of macromolecules, and flow-rate-independent resolution qualified them to be used effectively in separation of plasmid DNA on laboratory as well as on large scale. A development and scale-up of plasmid DNA downstream process based on chromatographic monoliths is described and discussed below. Special emphasis is put on the introduction of process analytical technology principles and tools for optimization and control of a downstream process.

Key words

  • Chromatography
  • Column
  • Downstream process
  • Large-scale
  • Monolith
  • Pharmaceutical grade
  • Plasmid DNA manufacturing
  • Plasmid DNA purification
  • Process analytical control
  • Scale-up

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References

  1. Abdulrahman A, Ghanem A (2018) Recent advances in chromatographic purification of plasmid DNA for gene therapy and DNA vaccines: a review. Anal Chim Acta 1025:41–57

    CrossRef  CAS  Google Scholar 

  2. Jungbauer A (2013) Continuous downstream processing of biopharmaceuticals. Trends Biotechnol 31:479–492

    CrossRef  CAS  Google Scholar 

  3. Podgornik A, Yamamoto S, Peterka M et al (2013) Fast separation of large biomolecules using short monolithic columns. J Chromatogr B 927:80–89

    CrossRef  CAS  Google Scholar 

  4. Urthaler J, Schlegl R, Podgornik A et al (2005) Application of monoliths for plasmid DNA purification development and transfer to production. J Chromatogr A 1065:93–106

    CrossRef  CAS  Google Scholar 

  5. Podgornik A, Barut M, Peterka M et al (2012) Monoliths in bioprocessing. In: Biopharmaceutical production technology. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany, pp 333–375

    CrossRef  Google Scholar 

  6. Home—BIA Separations. https://www.biaseparations.com/

  7. Smrekar F, Podgornik A, Ciringer M et al (2010) Preparation of pharmaceutical-grade plasmid DNA using methacrylate monolithic columns. Vaccine 28:2039–2045

    CrossRef  CAS  Google Scholar 

  8. Cardoso S, Černigoj U, Lendero Krajnc N et al (2015) Chromatographic purification of plasmid DNA on hydrophobic methacrylate monolithic supports. Sep Purif Technol 147:139

    CrossRef  CAS  Google Scholar 

  9. Černigoj U, Martinuč U, Cardoso S et al (2015) Sample displacement chromatography of plasmid DNA isoforms. J Chromatogr A 1414:103

    CrossRef  Google Scholar 

  10. Rathore AS, Bhambure R, Ghare V (2010) Process analytical technology (PAT) for biopharmaceutical products. Anal Bioanal Chem 398:137–154

    CrossRef  CAS  Google Scholar 

  11. Peljhan S, Jakop T, Šček D et al (2017) HPLC fingerprinting approach for raw material assessment and unit operation tracking for IVIG production from Cohn I+II+III fraction. Electrophoresis 38:2880–2885

    CrossRef  CAS  Google Scholar 

  12. Mota É, Sousa Â, Černigoj U et al (2013) Rapid quantification of supercoiled plasmid deoxyribonucleic acid using a monolithic ion exchanger. J Chromatogr A 1291:114–121

    CrossRef  CAS  Google Scholar 

  13. Gabor B, Černigoj U, Barut M et al (2013) Reversible entrapment of plasmid deoxyribonucleic acid on different chromatographic supports. J Chromatogr A 1311:106

    CrossRef  CAS  Google Scholar 

  14. Gabor B, Černigoj U, Smrekar F (2010) In-process control of pDNA production on CIMac pDNA analytical column. Bioprocess Int 8

    Google Scholar 

  15. Hebel H, Attra H, Khan A et al (2006) Successful parallel development and integration of a plasmid-based biologic, container/closure system and electrokinetic delivery device. Vaccine 24:4607–4614

    CrossRef  CAS  Google Scholar 

  16. Cai Y, Rodriguez S, Rameswaran R et al (2010) Production of pharmaceutical-grade plasmids at high concentration and high supercoiled percentage. Vaccine 28:2046–2052

    CrossRef  CAS  Google Scholar 

  17. Kong S, Titchener-Hooker N, Levy MS (2006) Plasmid DNA processing for gene therapy and vaccination: studies on the membrane sterilisation filtration step. J Membrane Sci 280:824–831

    CrossRef  CAS  Google Scholar 

  18. Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513–1523

    CrossRef  CAS  Google Scholar 

  19. Krajnc NL, Smrekar F, Štrancar A et al (2011) Adsorption behavior of large plasmids on the anion-exchange methacrylate monolithic columns. J Chromatogr A 1218:2413–2424

    CrossRef  CAS  Google Scholar 

  20. Schmeer M, Buchholz T, Schleef M (2017) Plasmid DNA manufacturing for indirect and direct clinical applications. Hum Gene Ther 28:856–861

    CrossRef  CAS  Google Scholar 

  21. Dubinina NI, Kurenbin OI, Tennikova TB (1996) Peculiarities of gradient ion-exchange high-performance liquid chromatography of proteins. J Chromatogr A 753:217–225

    CrossRef  CAS  Google Scholar 

  22. Milavec Zmak P, Podgornik H, Jancar J et al (2003) Transfer of gradient chromatographic methods for protein separation to convective interaction media monolithic columns. J Chromatogr A 1006:195–205

    CrossRef  CAS  Google Scholar 

  23. Yamamoto S, Kita A (2005) Theoretical background of short chromatographic layers. J Chromatogr A 1065:45–50

    CrossRef  CAS  Google Scholar 

  24. Diamantino T, Pereira P, Queiroz JA et al (2016) Minicircle DNA purification using a CIM® DEAE-1 monolithic support. J Sep Sci 39:3544–3549

    CrossRef  CAS  Google Scholar 

  25. Podgornik A, Hamachi M, Isakari Y et al (2017) Effect of pore size on performance of monolithic tube chromatography of large biomolecules. Electrophoresis 38:2892–2899

    CrossRef  CAS  Google Scholar 

  26. Mao Y, Kulozik U (2018) Selective hydrolysis of whey proteins using a flow-through monolithic reactor with large pore size and immobilised trypsin. Int Dairy J 85:96–104

    CrossRef  CAS  Google Scholar 

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Acknowledgments

We thank the research and application team of BIA Separations, Ajdovščina, Slovenia, for contributing work and discussions, especially Franci Smrekar, Boštjan Gabor, Nika Lendero Krajnc, Miloš Barut, and Aleš Podgornik for their crucial roles in pDNA DSP development; Tomas Kostelec for his support with figures and text revision.

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Correspondence to Urh Černigoj .

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Černigoj, U., Štrancar, A. (2021). Scale-Up of Plasmid DNA Downstream Process Based on Chromatographic Monoliths. In: Sousa, Â. (eds) DNA Vaccines. Methods in Molecular Biology, vol 2197. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0872-2_9

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  • DOI: https://doi.org/10.1007/978-1-0716-0872-2_9

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0871-5

  • Online ISBN: 978-1-0716-0872-2

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