Abstract
Purification of high-quality plasmid DNA in large quantities is a crucial step in its production for therapeutic use and is usually conducted by different chromatographic techniques. Large-scale preparations require the optimization of yield and homogeneity, while maximizing removal of contaminants and preserving molecular integrity. The advantages of Convective Interaction Media® (CIM®) monolith stationary phases, including low backpressure, fast separation of macromolecules, and flow-rate-independent resolution qualified them to be used effectively in separation of plasmid DNA on laboratory as well as on large scale. A development and scale-up of plasmid DNA downstream process based on chromatographic monoliths is described and discussed below. Special emphasis is put on the introduction of process analytical technology principles and tools for optimization and control of a downstream process.
Key words
- Chromatography
- Column
- Downstream process
- Large-scale
- Monolith
- Pharmaceutical grade
- Plasmid DNA manufacturing
- Plasmid DNA purification
- Process analytical control
- Scale-up
This is a preview of subscription content, access via your institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Abdulrahman A, Ghanem A (2018) Recent advances in chromatographic purification of plasmid DNA for gene therapy and DNA vaccines: a review. Anal Chim Acta 1025:41–57
Jungbauer A (2013) Continuous downstream processing of biopharmaceuticals. Trends Biotechnol 31:479–492
Podgornik A, Yamamoto S, Peterka M et al (2013) Fast separation of large biomolecules using short monolithic columns. J Chromatogr B 927:80–89
Urthaler J, Schlegl R, Podgornik A et al (2005) Application of monoliths for plasmid DNA purification development and transfer to production. J Chromatogr A 1065:93–106
Podgornik A, Barut M, Peterka M et al (2012) Monoliths in bioprocessing. In: Biopharmaceutical production technology. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany, pp 333–375
Home—BIA Separations. https://www.biaseparations.com/
Smrekar F, Podgornik A, Ciringer M et al (2010) Preparation of pharmaceutical-grade plasmid DNA using methacrylate monolithic columns. Vaccine 28:2039–2045
Cardoso S, Černigoj U, Lendero Krajnc N et al (2015) Chromatographic purification of plasmid DNA on hydrophobic methacrylate monolithic supports. Sep Purif Technol 147:139
Černigoj U, Martinuč U, Cardoso S et al (2015) Sample displacement chromatography of plasmid DNA isoforms. J Chromatogr A 1414:103
Rathore AS, Bhambure R, Ghare V (2010) Process analytical technology (PAT) for biopharmaceutical products. Anal Bioanal Chem 398:137–154
Peljhan S, Jakop T, Šček D et al (2017) HPLC fingerprinting approach for raw material assessment and unit operation tracking for IVIG production from Cohn I+II+III fraction. Electrophoresis 38:2880–2885
Mota É, Sousa Â, Černigoj U et al (2013) Rapid quantification of supercoiled plasmid deoxyribonucleic acid using a monolithic ion exchanger. J Chromatogr A 1291:114–121
Gabor B, Černigoj U, Barut M et al (2013) Reversible entrapment of plasmid deoxyribonucleic acid on different chromatographic supports. J Chromatogr A 1311:106
Gabor B, Černigoj U, Smrekar F (2010) In-process control of pDNA production on CIMac pDNA analytical column. Bioprocess Int 8
Hebel H, Attra H, Khan A et al (2006) Successful parallel development and integration of a plasmid-based biologic, container/closure system and electrokinetic delivery device. Vaccine 24:4607–4614
Cai Y, Rodriguez S, Rameswaran R et al (2010) Production of pharmaceutical-grade plasmids at high concentration and high supercoiled percentage. Vaccine 28:2046–2052
Kong S, Titchener-Hooker N, Levy MS (2006) Plasmid DNA processing for gene therapy and vaccination: studies on the membrane sterilisation filtration step. J Membrane Sci 280:824–831
Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513–1523
Krajnc NL, Smrekar F, Štrancar A et al (2011) Adsorption behavior of large plasmids on the anion-exchange methacrylate monolithic columns. J Chromatogr A 1218:2413–2424
Schmeer M, Buchholz T, Schleef M (2017) Plasmid DNA manufacturing for indirect and direct clinical applications. Hum Gene Ther 28:856–861
Dubinina NI, Kurenbin OI, Tennikova TB (1996) Peculiarities of gradient ion-exchange high-performance liquid chromatography of proteins. J Chromatogr A 753:217–225
Milavec Zmak P, Podgornik H, Jancar J et al (2003) Transfer of gradient chromatographic methods for protein separation to convective interaction media monolithic columns. J Chromatogr A 1006:195–205
Yamamoto S, Kita A (2005) Theoretical background of short chromatographic layers. J Chromatogr A 1065:45–50
Diamantino T, Pereira P, Queiroz JA et al (2016) Minicircle DNA purification using a CIM® DEAE-1 monolithic support. J Sep Sci 39:3544–3549
Podgornik A, Hamachi M, Isakari Y et al (2017) Effect of pore size on performance of monolithic tube chromatography of large biomolecules. Electrophoresis 38:2892–2899
Mao Y, Kulozik U (2018) Selective hydrolysis of whey proteins using a flow-through monolithic reactor with large pore size and immobilised trypsin. Int Dairy J 85:96–104
Acknowledgments
We thank the research and application team of BIA Separations, Ajdovščina, Slovenia, for contributing work and discussions, especially Franci Smrekar, Boštjan Gabor, Nika Lendero Krajnc, Miloš Barut, and Aleš Podgornik for their crucial roles in pDNA DSP development; Tomas Kostelec for his support with figures and text revision.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Černigoj, U., Štrancar, A. (2021). Scale-Up of Plasmid DNA Downstream Process Based on Chromatographic Monoliths. In: Sousa, Â. (eds) DNA Vaccines. Methods in Molecular Biology, vol 2197. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0872-2_9
Download citation
DOI: https://doi.org/10.1007/978-1-0716-0872-2_9
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-0871-5
Online ISBN: 978-1-0716-0872-2
eBook Packages: Springer Protocols