Channelrhodopsin pp 189-199 | Cite as
Selecting Channelrhodopsin Constructs for Optimal Visual Restoration in Differing Light Conditions
- 1 Mentions
- 637 Downloads
Abstract
Channelrhodopsin (ChR)-based optogenetics is one promising approach to restore vision in photoreceptor degenerative diseases such as retinitis pigmentosa (RP) and age-related macular degeneration (AMD). Currently, a large number of ChRs from different alga species as well as engineered variants are available. They vary with their light response properties like peak sensitive wavelength (λmax), current amplitude, and kinetics. Therefore, it is important to choose an appropriate ChR for practical applications, such as vision restoration. Here we describe a standard laboratory protocol for characterizing properties of ChRs in in vitro in human embryonic kidney (HEK) cells. Based on such characterization, we also discuss the criteria for selecting optimal ChRs for optogenetic vision restoration.
Key words
Channelrhodopsin (ChR) Optogenetics Vision restoration Operational light sensitivity HEK cellsReferences
- 1.Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, Pan ZH (2006) Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration. Neuron 50(1):23–33. https://doi.org/10.1016/j.neuron.2006.02.026CrossRefPubMedPubMedCentralGoogle Scholar
- 2.Tomita H, Sugano E, Isago H, Hiroi T, Wang Z, Ohta E, Tamai M (2010) Channelrhodopsin-2 gene transduced into retinal ganglion cells restores functional vision in genetically blind rats. Exp Eye Res 90(3):429–436. https://doi.org/10.1016/j.exer.2009.12.006CrossRefPubMedGoogle Scholar
- 3.Tomita H, Sugano E, Yawo H, Ishizuka T, Isago H, Narikawa S, Kugler S, Tamai M (2007) Restoration of visual response in aged dystrophic RCS rats using AAV-mediated channelopsin-2 gene transfer. Invest Ophthalmol Vis Sci 48(8):3821–3826. https://doi.org/10.1167/iovs.06-1501CrossRefPubMedGoogle Scholar
- 4.Lin B, Koizumi A, Tanaka N, Panda S, Masland RH (2008) Restoration of visual function in retinal degeneration mice by ectopic expression of melanopsin. Proc Natl Acad Sci U S A 105(41):16009–16014. https://doi.org/10.1073/pnas.0806114105CrossRefPubMedPubMedCentralGoogle Scholar
- 5.Lagali PS, Balya D, Awatramani GB, Munch TA, Kim DS, Busskamp V, Cepko CL, Roska B (2008) Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration. Nat Neurosci 11(6):667–675. https://doi.org/10.1038/nn.2117CrossRefPubMedGoogle Scholar
- 6.Zhang Y, Ivanova E, Bi A, Pan ZH (2009) Ectopic expression of multiple microbial rhodopsins restores ON and OFF light responses in retinas with photoreceptor degeneration. J Neurosci 29(29):9186–9196. https://doi.org/10.1523/jneurosci.0184-09.2009CrossRefPubMedPubMedCentralGoogle Scholar
- 7.Busskamp V, Duebel J, Balya D, Fradot M, Viney TJ, Siegert S, Groner AC, Cabuy E, Forster V, Seeliger M, Biel M, Humphries P, Paques M, Mohand-Said S, Trono D, Deisseroth K, Sahel JA, Picaud S, Roska B (2010) Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa. Science (New York, NY) 329(5990):413–417. https://doi.org/10.1126/science.1190897CrossRefGoogle Scholar
- 8.Pan ZH, Ganjawala TH, Lu Q, Ivanova E, Zhang Z (2014) ChR2 mutants at L132 and T159 with improved operational light sensitivity for vision restoration. PLoS One 9(6):e98924. https://doi.org/10.1371/journal.pone.0098924CrossRefPubMedPubMedCentralGoogle Scholar
- 9.Pan Z-H, Lu Q, Bi A, Dizhoor AM, Abrams GW (2015) Optogenetic approaches to restoring vision. Annu Rev Vis Sci 1(1):185–210. https://doi.org/10.1146/annurev-vision-082114-035532CrossRefPubMedGoogle Scholar
- 10.Ganjawala TH, Lu Q, Fenner MD, Abrams GW, Pan ZH (2019) Improved CoChR variants restore visual acuity and contrast sensitivity in a mouse model of blindness under ambient light conditions. Mol Ther. https://doi.org/10.1016/j.ymthe.2019.04.002
- 11.Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, Hegemann P (2002) Channelrhodopsin-1: a light-gated proton channel in green algae. Science (New York, NY) 296(5577):2395–2398. https://doi.org/10.1126/science.1072068CrossRefGoogle Scholar
- 12.Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, Ollig D, Hegemann P, Bamberg E (2003) Channelrhodopsin-2, a directly light-gated cation-selective membrane channel. Proc Natl Acad Sci U S A 100(24):13940–13945. https://doi.org/10.1073/pnas.1936192100CrossRefPubMedPubMedCentralGoogle Scholar
- 13.Ernst OP, Lodowski DT, Elstner M, Hegemann P, Brown LS, Kandori H (2014) Microbial and animal rhodopsins: structures, functions, and molecular mechanisms. Chem Rev 114(1):126–163. https://doi.org/10.1021/cr4003769CrossRefPubMedGoogle Scholar
- 14.Govorunova EG, Sineshchekov OA, Li H, Janz R, Spudich JL (2013) Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis. J Biol Chem 288(41):29911–29922. https://doi.org/10.1074/jbc.M113.505495CrossRefPubMedPubMedCentralGoogle Scholar
- 15.Kleinlogel S, Feldbauer K, Dempski RE, Fotis H, Wood PG, Bamann C, Bamberg E (2011) Ultra light-sensitive and fast neuronal activation with the Ca(2)+−permeable channelrhodopsin CatCh. Nat Neurosci 14(4):513–518. https://doi.org/10.1038/nn.2776CrossRefPubMedGoogle Scholar
- 16.Mattis J, Tye KM, Ferenczi EA, Ramakrishnan C, O'Shea DJ, Prakash R, Gunaydin LA, Hyun M, Fenno LE, Gradinaru V, Yizhar O, Deisseroth K (2012) Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins. Nat Methods 9(2):159–172. https://doi.org/10.1038/nmeth.1808CrossRefGoogle Scholar
- 17.Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, Surek B, Melkonian M, Jayaraman V, Constantine-Paton M, Wong GK, Boyden ES (2014) Independent optical excitation of distinct neural populations. Nat Methods 11(3):338–346. https://doi.org/10.1038/nmeth.2836CrossRefPubMedPubMedCentralGoogle Scholar
- 18.Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (2015) NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics. Science (New York, NY) 349(6248):647–650. https://doi.org/10.1126/science.aaa7484CrossRefGoogle Scholar
- 19.Wietek J, Prigge M (2016) Enhancing channelrhodopsins: an overview. Methods Mol Biol 1408:141–165. https://doi.org/10.1007/978-1-4939-3512-3_10CrossRefPubMedGoogle Scholar