Abstract
Innate lymphoid cells (ILCs) are emerging as important effectors of innate immunity and play a critical role in maintaining intestinal immune homeostasis. They are tissue-residing immune cells that can be subdivided based on master transcription factor and cytokine expression, bearing striking resemblance to their CD4+ T helper (Th) cell counterparts. ILCs are increasingly recognized as potential mediators of inflammatory bowel disease (IBD) providing a need to explore their functional and phenotypic differences in health vs. disease. In this chapter we outline protocols for the characterization of human ILCs and intracellular cytokine expression using flow cytometry. We include protocols for isolating human peripheral blood and colonic lamina propria mononuclear cells essential for evaluating human IBD specimens.
Key words
- Innate lymphoid cell
- Inflammatory bowel disease
- Cell isolation
- Flow cytometry
- Gating
This is a preview of subscription content, access via your institution.
Buying options



References
Parronchi P, Romagnani P, Annunziato F et al (1997) Type 1 T-helper cell predominance and interleukin-12 expression in the gut of patients with Crohn’s disease. Am J Pathol 150:823–832
Rovedatti L, Kudo T, Biancheri P et al (2009) Differential regulation of interleukin 17 and interferon c production in inflammatory bowel disease. Gut 58:1629–1636. https://doi.org/10.1136/gut.2009.182170
Garrett WS, Lord GM, Punit S et al (2007) Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system. Cell 131:33–45. https://doi.org/10.1016/j.cell.2007.08.017
Powell N, Walker AW, Stolarczyk E et al (2012) The transcription factor T-bet regulates intestinal inflammation mediated by interleukin-7 receptor+ innate lymphoid cells. Immunity 37:674–684. https://doi.org/10.1016/j.immuni.2012.09.008
Buonocore S, Ahern PP, Uhlig HH et al (2010) Innate lymphoid cells drive interleukin-23-dependent innate intestinal pathology. Nature 464:1371–1375. https://doi.org/10.1038/nature08949
Cella M, Fuchs A, Vermi W et al (2009) A human natural killer cell subset provides an innate source of IL-22 for mucosal immunity. Nature 457:722–725. https://doi.org/10.1038/nature07537
Bernink JH, Peters CP, Munneke M et al (2013) Human type 1 innate lymphoid cells accumulate in inflamed mucosal tissues. Nat Immunol 14:221. https://doi.org/10.1038/ni.2534
Spits H, Cupedo T (2012) Innate lymphoid cells: emerging insights in development, lineage relationships, and function. Annu Rev Immunol 30:647–675. https://doi.org/10.1146/annurev-immunol-020711-075053
Constantinides MG, McDonald BD, Verhoef PA, Bendelac A (2014) A committed precursor to innate lymphoid cells. Nature 508:397–401. https://doi.org/10.1038/nature13047
Goldberg R, Prescott N, Lord GM et al (2015) The unusual suspects—innate lymphoid cells as novel therapeutic targets in IBD. Nat Rev Gastroenterol Hepatol 12:271–283. https://doi.org/10.1038/nrgastro.2015.52
Bernink JH, Mjösberg J, Spits H (2017) Human ILC1: to be or not to be. Immunity 46:756–757. https://doi.org/10.1016/j.immuni.2017.05.001
Caligiuri MA (2008) Human natural killer cells. Blood 112:461–469. https://doi.org/10.1182/blood-2007-09-077438
Crellin NK, Trifari S, Kaplan CD et al (2010) Human NKp44+IL-22+ cells and LTi-like cells constitute a stable RORC+ lineage distinct from conventional natural killer cells. J Exp Med 207:281–290. https://doi.org/10.1084/jem.20091509
Krämer B, Goeser F, Lutz P et al (2017) Compartment-specific distribution of human intestinal innate lymphoid cells is altered in HIV patients under effective therapy. PLoS Pathog 13:e1006373. https://doi.org/10.1371/journal.ppat.1006373
Di Marco Barros R, Roberts NA, Dart RJ et al (2016) Epithelia use butyrophilin-like molecules to shape organ-specific γδ T cell compartments. Cell 167:203–218. https://doi.org/10.1016/j.cell.2016.08.030
Clark RA, Chong BF, Mirchandani N et al (2006) A novel method for the isolation of skin resident T cells from normal and diseased human skin. J Invest Dermatol 126:1059–1070. https://doi.org/10.1038/sj.jid.5700199
Simoni Y, Fehlings M, Kløverpris HN et al (2017) Human innate lymphoid cell subsets possess tissue-type based heterogeneity in phenotype and frequency. Immunity 46:148–161. https://doi.org/10.1016/j.immuni.2016.11.005
Acknowledgments
Research enabling the optimization of this protocol was supported by the Medical Research Council and the National Institute for Health Research (NIHR) Biomedical Research Centre at Guy’s and St Thomas’ National Health Service (NHS) Foundation Trust and King’s College London.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2020 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Omer, O.S., Powell, N., Lord, G.M. (2020). Characterizing Innate Lymphoid Cell Phenotype and Function in Human Inflammatory Bowel Disease. In: Amarnath, S. (eds) Innate Lymphoid Cells . Methods in Molecular Biology, vol 2121. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0338-3_17
Download citation
DOI: https://doi.org/10.1007/978-1-0716-0338-3_17
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-0337-6
Online ISBN: 978-1-0716-0338-3
eBook Packages: Springer Protocols