Skip to main content

Characterizing Innate Lymphoid Cell Phenotype and Function in Human Inflammatory Bowel Disease

Part of the Methods in Molecular Biology book series (MIMB,volume 2121)

Abstract

Innate lymphoid cells (ILCs) are emerging as important effectors of innate immunity and play a critical role in maintaining intestinal immune homeostasis. They are tissue-residing immune cells that can be subdivided based on master transcription factor and cytokine expression, bearing striking resemblance to their CD4+ T helper (Th) cell counterparts. ILCs are increasingly recognized as potential mediators of inflammatory bowel disease (IBD) providing a need to explore their functional and phenotypic differences in health vs. disease. In this chapter we outline protocols for the characterization of human ILCs and intracellular cytokine expression using flow cytometry. We include protocols for isolating human peripheral blood and colonic lamina propria mononuclear cells essential for evaluating human IBD specimens.

Key words

  • Innate lymphoid cell
  • Inflammatory bowel disease
  • Cell isolation
  • Flow cytometry
  • Gating

This is a preview of subscription content, access via your institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • DOI: 10.1007/978-1-0716-0338-3_17
  • Chapter length: 13 pages
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
eBook
USD   109.00
Price excludes VAT (USA)
  • ISBN: 978-1-0716-0338-3
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
Softcover Book
USD   139.99
Price excludes VAT (USA)
Hardcover Book
USD   199.99
Price excludes VAT (USA)
Fig. 1
Fig. 2
Fig. 3

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Parronchi P, Romagnani P, Annunziato F et al (1997) Type 1 T-helper cell predominance and interleukin-12 expression in the gut of patients with Crohn’s disease. Am J Pathol 150:823–832

    CAS  PubMed  PubMed Central  Google Scholar 

  2. Rovedatti L, Kudo T, Biancheri P et al (2009) Differential regulation of interleukin 17 and interferon c production in inflammatory bowel disease. Gut 58:1629–1636. https://doi.org/10.1136/gut.2009.182170

    CrossRef  CAS  PubMed  Google Scholar 

  3. Garrett WS, Lord GM, Punit S et al (2007) Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system. Cell 131:33–45. https://doi.org/10.1016/j.cell.2007.08.017

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  4. Powell N, Walker AW, Stolarczyk E et al (2012) The transcription factor T-bet regulates intestinal inflammation mediated by interleukin-7 receptor+ innate lymphoid cells. Immunity 37:674–684. https://doi.org/10.1016/j.immuni.2012.09.008

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  5. Buonocore S, Ahern PP, Uhlig HH et al (2010) Innate lymphoid cells drive interleukin-23-dependent innate intestinal pathology. Nature 464:1371–1375. https://doi.org/10.1038/nature08949

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  6. Cella M, Fuchs A, Vermi W et al (2009) A human natural killer cell subset provides an innate source of IL-22 for mucosal immunity. Nature 457:722–725. https://doi.org/10.1038/nature07537

    CrossRef  CAS  PubMed  Google Scholar 

  7. Bernink JH, Peters CP, Munneke M et al (2013) Human type 1 innate lymphoid cells accumulate in inflamed mucosal tissues. Nat Immunol 14:221. https://doi.org/10.1038/ni.2534

    CrossRef  CAS  PubMed  Google Scholar 

  8. Spits H, Cupedo T (2012) Innate lymphoid cells: emerging insights in development, lineage relationships, and function. Annu Rev Immunol 30:647–675. https://doi.org/10.1146/annurev-immunol-020711-075053

    CrossRef  CAS  PubMed  Google Scholar 

  9. Constantinides MG, McDonald BD, Verhoef PA, Bendelac A (2014) A committed precursor to innate lymphoid cells. Nature 508:397–401. https://doi.org/10.1038/nature13047

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  10. Goldberg R, Prescott N, Lord GM et al (2015) The unusual suspects—innate lymphoid cells as novel therapeutic targets in IBD. Nat Rev Gastroenterol Hepatol 12:271–283. https://doi.org/10.1038/nrgastro.2015.52

    CrossRef  CAS  PubMed  Google Scholar 

  11. Bernink JH, Mjösberg J, Spits H (2017) Human ILC1: to be or not to be. Immunity 46:756–757. https://doi.org/10.1016/j.immuni.2017.05.001

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  12. Caligiuri MA (2008) Human natural killer cells. Blood 112:461–469. https://doi.org/10.1182/blood-2007-09-077438

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  13. Crellin NK, Trifari S, Kaplan CD et al (2010) Human NKp44+IL-22+ cells and LTi-like cells constitute a stable RORC+ lineage distinct from conventional natural killer cells. J Exp Med 207:281–290. https://doi.org/10.1084/jem.20091509

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  14. Krämer B, Goeser F, Lutz P et al (2017) Compartment-specific distribution of human intestinal innate lymphoid cells is altered in HIV patients under effective therapy. PLoS Pathog 13:e1006373. https://doi.org/10.1371/journal.ppat.1006373

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  15. Di Marco Barros R, Roberts NA, Dart RJ et al (2016) Epithelia use butyrophilin-like molecules to shape organ-specific γδ T cell compartments. Cell 167:203–218. https://doi.org/10.1016/j.cell.2016.08.030

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  16. Clark RA, Chong BF, Mirchandani N et al (2006) A novel method for the isolation of skin resident T cells from normal and diseased human skin. J Invest Dermatol 126:1059–1070. https://doi.org/10.1038/sj.jid.5700199

    CrossRef  CAS  PubMed  Google Scholar 

  17. Simoni Y, Fehlings M, Kløverpris HN et al (2017) Human innate lymphoid cell subsets possess tissue-type based heterogeneity in phenotype and frequency. Immunity 46:148–161. https://doi.org/10.1016/j.immuni.2016.11.005

    CrossRef  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

Research enabling the optimization of this protocol was supported by the Medical Research Council and the National Institute for Health Research (NIHR) Biomedical Research Centre at Guy’s and St Thomas’ National Health Service (NHS) Foundation Trust and King’s College London.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Graham M. Lord .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and Permissions

Copyright information

© 2020 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Verify currency and authenticity via CrossMark

Cite this protocol

Omer, O.S., Powell, N., Lord, G.M. (2020). Characterizing Innate Lymphoid Cell Phenotype and Function in Human Inflammatory Bowel Disease. In: Amarnath, S. (eds) Innate Lymphoid Cells . Methods in Molecular Biology, vol 2121. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0338-3_17

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-0338-3_17

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0337-6

  • Online ISBN: 978-1-0716-0338-3

  • eBook Packages: Springer Protocols