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Epigenetic Barcodes for Detection of Adulterated Plants and Plant-Derived Products

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Plant Epigenetics and Epigenomics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2093))

Abstract

In this chapter, we report a possible alternative use of epigenetics by applying methylation-sensitive amplified fragment length polymorphisms (MS-AFLP) to saffron traceability. Saffron is the most expensive plant-derived product in the world and one of the most frequently adulterated. One of the most frequent adulteration is by adding to saffron stigmas different parts of the saffron flower itself to increase volumes. While DNA is the same in all the parts of the plant, the epigenetic state can vary according to the organ and/or tissue of origin, making it possible to discriminate the stigmas from the other parts of saffron flower. In the subsequent method, the protocol to carry out a MS-AFLP analysis of saffron DNA methylation patterns is described.

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References

  1. Fernández JA (2004) Biology, biotechnology and biomedicine of saffron. Recent Res Dev Plant Sci 2:127–159

    Google Scholar 

  2. Food Fraud Database, Decernis Washington. https://www.foodfraud.org. Accessed on 24 September, 2015

  3. European Saffron White Book. Available online: www.europeansaffron.eu/archivos/White%20book%20english.pdf

  4. Babaei S, Talebi M, Bahar M (2014) Developing an SCAR and ITS reliable multiplex PCR-based assay for safflower adulterant detection in saffron samples. Food Control 35:323–328

    Article  CAS  Google Scholar 

  5. Marieschi M, Torelli A, Bruni R (2012) Quality control of saffron (Crocus sativus L.): development of SCAR markers for the detection of plant adulterants used as bulking agents. J Agric Food Chem 60:10,998–11,004

    Article  CAS  Google Scholar 

  6. Soffritti G, Busconi M, Sánchez RA, Thiercelin JM, Polissiou M, Roldán M, Fernández JA (2016) Genetic and epigenetic approaches for the possible detection of adulteration and auto-adulteration in saffron (Crocus sativus L.) spice. Molecules 21:343

    Article  Google Scholar 

  7. Busconi M, Colli L, Sánchez RA, Santaella M, De-Los-Mozos Pascual M, Santana O, Roldán M, Fernández JA (2015) AFLP and MS-AFLP analysis of the variation within Saffron Crocus (Crocus sativus L.) Germplasm. PLoS One 10:e0123434

    Article  Google Scholar 

  8. Widman N, Feng S, Jacobsen SE, Pellegrini M (2014) Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics 9:236–242

    Article  CAS  Google Scholar 

  9. Busconi M, Soffritti G, Stagnati L, Marocco A, Marcos Martínez J, De Los Mozos Pascual M, Fernandez JA (2018) Epigenetic stability in Saffron (Crocus sativus L.) accessions during four consutive years of cultivation and vegetative propagation under open field conditions. Plant Sci 277:1–10

    Article  CAS  Google Scholar 

  10. Lu G, Wu X, Chen B, Gao G, Xu K (2007) Evaluation of genetic and epigenetic modification in rapeseed (Brassica napus) induced by salt stress. J Integr Plant Biol 49:1599–1607

    Article  CAS  Google Scholar 

  11. Marconi G, Pace R, Traini A, Raggi L, Lutts S, Chiusano M et al (2013) Use of MSAP markers to analyse the effects of salt stress on DNA methylation in rapeseed (Brassica napus var. oleifera). PLoS One 8:e75597

    Article  CAS  Google Scholar 

  12. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414

    Article  CAS  Google Scholar 

  13. Fulneček J, Kovařík A (2014) How to interpret methylation sensitive amplified polymorphism (MSAP) profiles? BMC Genet 15:2

    Article  Google Scholar 

  14. Fazekas AJ, Kuzmina ML, Newmaster SG, Hollingsworth PM (2012) DNA barcoding methods for land plants. In: Kress WJ, Erickson DL (eds) DNA barcodes: methods and protocols, methods in molecular biology, 1st edn. Wiley, Weinheim

    Google Scholar 

  15. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

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Acknowledgments

This work has been partially supported by the European Union COST FA1101 Action “Omics Technologies for Crop Improvement, Traceability, Determination of Authenticity, Adulteration and Origin in Saffron” and the Spanish project INIA RFP2014-00012 “Conservation and management of germplasm collections of the Spanish Network in Bank of Plant Germplasm of Cuenca.”

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Correspondence to Matteo Busconi .

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Busconi, M., Soffritti, G., Mozos Pascual, M.D., Fernandez, J.A. (2020). Epigenetic Barcodes for Detection of Adulterated Plants and Plant-Derived Products. In: Spillane, C., McKeown, P. (eds) Plant Epigenetics and Epigenomics . Methods in Molecular Biology, vol 2093. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0179-2_16

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  • DOI: https://doi.org/10.1007/978-1-0716-0179-2_16

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0178-5

  • Online ISBN: 978-1-0716-0179-2

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