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Type 1 Diabetes High-Risk HLA Class II Determination by Polymerase Chain Reaction Sequence-Specific Primers

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1433))

Abstract

The only strategy to select individuals at increased risk for type 1 diabetes for primary prevention trials is through genetic risk assessment. While genome-wide association studies have identified more than 40 loci associated with type 1 diabetes, the single most important genetic determinants lie within the human leucocyte antigen gene family on chromosome 6.

In this chapter we describe a protocol for a straightforward, cheap strategy to determine HLA class II mediated risk of type 1 diabetes. This method has proved robust for genotyping whole-genome-amplified DNA as well as DNA extracted directly from human tissues.

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References

  1. Nerup J, Platz P, Andersen OO et al (1974) HL-A antigens and diabetes mellitus. Lancet 2:864–866

    Article  CAS  PubMed  Google Scholar 

  2. Cudworth AG, Woodrow JC (1975) Evidence for HL-A-linked genes in ‘juvenile’ diabetes mellitus. Br Med J 3:133–135

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Todd JA, Bell JI, McDevitt HO (1987) HLA-DQ beta gene contributes to susceptibility and resistance to insulin-dependent diabetes mellitus. Nature 329:599–604

    Article  CAS  PubMed  Google Scholar 

  4. Caillat-Zucman S, Garchon HJ, Timsit J, Assan R, Boitard C, Djilali-Saiah I, Bougnères P, Bach JF (1992) Age-dependent HLA genetic heterogeneity of type 1 insulin-dependent diabetes mellitus. J Clin Invest 90:2242–2250

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Gillespie KM, Gale EA, Bingley PJ (2002) High familial risk and genetic susceptibility in early-onset childhood diabetes. Diabetes 51:210–214

    Article  CAS  PubMed  Google Scholar 

  6. Gillespie KM, Aitken RJ, Wilson I et al (2014) Early onset of diabetes in the proband is the major determinant of risk in HLA DR3-DQ2/DR4-DQ8 siblings. Diabetes 63:1041–1047

    Article  CAS  PubMed  Google Scholar 

  7. Lambert AP, Gillespie KM, Thomson G et al (2004) Absolute risk of childhood-onset type 1 diabetes defined by human leukocyte antigen class II genotype: a population-based study in the United Kingdom. J Clin Endocrinol Metab 89:4037–4043

    Article  CAS  PubMed  Google Scholar 

  8. Bunce M, O’Neill CM, Barnardo MC et al (1995) Phototyping: comprehensive DNA typing for HLA-A, B, C, DRB1, DRB3, DRB4, DRB5 & DQB1 by PCR with 144 primer mixes utilizing sequence-specific primers (PCR-SSP). Tissue Antigens 46:355–367

    Article  CAS  PubMed  Google Scholar 

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Acknowledgement

This work was supported by Diabetes UK grants to KMG.

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Correspondence to Kathleen M. Gillespie .

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Aitken, R.J., Mortimer, G.L., Gillespie, K.M. (2015). Type 1 Diabetes High-Risk HLA Class II Determination by Polymerase Chain Reaction Sequence-Specific Primers. In: Gillespie, K. (eds) Type-1 Diabetes. Methods in Molecular Biology, vol 1433. Humana Press, New York, NY. https://doi.org/10.1007/7651_2015_307

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  • DOI: https://doi.org/10.1007/7651_2015_307

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3641-0

  • Online ISBN: 978-1-4939-3643-4

  • eBook Packages: Springer Protocols

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