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High-Throughput, Noninvasive Imaging of Root Systems

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Plant Organogenesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 959))

Abstract

Root systems are complex structures key to plant health. The three-dimensional distribution of the root system, known as the root architecture, is important for optimal uptake of water and nutrients, as well as anchorage in the soil. Despite the importance of root systems, little is known about the genes that control root architecture, in part because of the difficulty of non-destructively viewing root systems. The Benfey lab has developed a gel-based imaging method to non-invasively examine root system architecture over time. Root systems of a variety of plant species can be quickly imaged daily or weekly. The platform is relatively inexpensive, high-throughput, and is ideally suited for researchers aiming to understand the genetic control of root architecture. Here we describe the application of this method to rice and maize root systems.

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References

  1. Lynch J (1995) Root architecture and plant productivity. Plant Physiol 109:7–13

    PubMed  CAS  Google Scholar 

  2. Steele KA, Virk DS, Kumar R, Prasad SC, Witcombe JR (2007) Field evaluation of upland rice lines selected for QTLs controlling root traits. Field Crops Res 101:180–186

    Article  Google Scholar 

  3. Tuberosa R, Salvi S, Sanguineti MC et al (2002) Mapping QTLs regulating morpho-physiological traits and yield: case studies, shortcomings, and perspectives in drought-stressed maize. Ann Bot 89:941–963

    Article  PubMed  CAS  Google Scholar 

  4. Iyer-Pascuzzi AS, Symonova O, Mileyko Y et al (2010) Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems. Plant Physiol 152:1148–1157

    Article  PubMed  CAS  Google Scholar 

  5. Hargreaves CE, Gregory PJ, Bengough AG (2009) Measuring root traits in barley (Hordeum vulgare ssp vulgare and ssp spontaneum) seedlings using gel chambers, soil sacs, and X-ray microtomography. Plant Soil 316:285–297

    Article  CAS  Google Scholar 

  6. Jahnke S, Menzel MI, van Dusschoten D et al (2009) Combined MRI-PET dissects dynamic changes in plant structures and functions. Plant J 59:634–644

    Article  PubMed  CAS  Google Scholar 

  7. de Dorlodot S, Forster B, Pages L et al (2007) Root system architecture: opportunities and constraints for genetic improvement of crops. Trends Plant Sci 12:474–481

    Article  PubMed  CAS  Google Scholar 

  8. Galkovskyi T, Mileyko Y, Bucksch A et al (2012) GiA Roots: software for the high throughput analysis of plant root system architecture. BMC Plant Bio 12:116–127

    Article  PubMed  CAS  Google Scholar 

  9. Clark R, MacCurdy R, Jung J et al (2011) Three-dimensional root phenotyping with a novel imaging and software platform. Plant Physiol 156:455–465

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Philip N. Benfey .

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© 2013 Springer Science+Business Media New York

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Iyer-Pascuzzi, A.S., Zurek, P.R., Benfey, P.N. (2013). High-Throughput, Noninvasive Imaging of Root Systems. In: De Smet, I. (eds) Plant Organogenesis. Methods in Molecular Biology, vol 959. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-221-6_11

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  • DOI: https://doi.org/10.1007/978-1-62703-221-6_11

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-220-9

  • Online ISBN: 978-1-62703-221-6

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