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Transposable Elements and Their Identification

  • Wojciech Makałowski
  • Amit Pande
  • Valer Gotea
  • Izabela Makałowska
Part of the Methods in Molecular Biology book series (MIMB, volume 855)

Abstract

Most genomes are populated by thousands of sequences that originated from mobile elements. On the one hand, these sequences present a real challenge in the process of genome analysis and annotation. On the other hand, there are very interesting biological subjects involved in many cellular processes. Here, we present an overview of transposable elements (TEs) biodiversity and their impact on genomic evolution. Finally, we discuss different approaches to the TEs detection and analyses.

Key words

Transposable elements Transposons Mobile elements Repetitive elements Genome analysis Genome evolution Junk DNA RepeatMasker TinT TEclass 

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Copyright information

© Springer Science+Business Media, LLC 2012

Authors and Affiliations

  • Wojciech Makałowski
    • 1
  • Amit Pande
    • 1
  • Valer Gotea
    • 2
  • Izabela Makałowska
    • 3
  1. 1.Institute of BioinformaticsUniversity of MuensterMuensterGermany
  2. 2.National Human Genome Research Institute, National Institutes of HealthRockvilleUSA
  3. 3.Laboratory of BioinformaticsAdam Mickiewicz UniversityPoznańPoland

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