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Detecting Rare Variants

  • Tao Feng
  • Xiaofeng Zhu
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 850)

Abstract

The limitations of genome-wide association (GWA) studies that are based on the common disease common variants (CDCV) hypothesis have motivated geneticists to test the hypothesis that rare variants contribute to the variation of common diseases, i.e., common disease/rare variants (CDRV). The newly developed high-throughput sequencing technologies have made the studies of rare variants practicable. Statistical approaches to test associations between a phenotype and rare variants are quickly developing. The central idea of these methods is to test a set of rare variants in a defined region or regions by collapsing or aggregating rare variants, thereby improving the statistical power. In this chapter, we introduce these methods as well as their applications in practice.

Key words

GWA Common disease common variants Common disease rare variants SNPs Haplotype Collapsing Aggregation 

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Copyright information

© Springer Science+Business Media, LLC 2012

Authors and Affiliations

  1. 1.Department of Epidemiology and BiostatisticsCase Western Reserve University School of MedicineClevelandUSA

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