Gene Regulatory Networks pp 359-394

Part of the Methods in Molecular Biology book series (MIMB, volume 786)

BioTapestry: A Tool to Visualize the Dynamic Properties of Gene Regulatory Networks

Protocol

Abstract

BioTapestry is an open source, freely available software tool that has been developed to handle the ­challenges of modeling genetic regulatory networks (GRNs). Using BioTapestry, a researcher can ­construct a network model and use it to visualize and understand the dynamic behavior of a complex, spatially and temporally distributed GRN. Here we provide a step-by-step example of a way to use BioTapestry to build a GRN model and discuss some common issues that can arise during this process.

Key words

Genetic regulatory networks Network modeling Network visualization Systems biology software Drawing gene networks Layout of gene networks Modeling Computational biology 

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Copyright information

© Springer Science+Business Media, LLC 2012

Authors and Affiliations

  1. 1.Institute for Systems BiologySeattleUSA

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