Advanced Protocols in Oxidative Stress I pp 331-342

Part of the Methods In Molecular Biology book series (MIMB, volume 477)

A Functional Genomics Approach to Identify and Characterize Oxidation Resistance Genes

  • Michael R. Volkert
  • Jen-Yeu Wang
  • Nathan A. Elliott

Abstract

In order to develop a more complete understanding of the genes required for resistance to oxidative DNA damage, we devised methods to identify genes that can prevent or repair oxidative DNA damage. These methods use the oxidative mutator phenotype of a repair deficient E. coli strain to measure the antimutator effect resulting from the expression of human cDNAs. The method can be adapted to characterize the function, and to determine the active site domains, of putative antimutator genes. Since bacteria do not contain subcellular compartments, genes that function in mitochondria, the cytoplasm, or the nucleus can be identified. Methods to determine the localization of genes in their normal host organism are also described.

Key words

Oxidative DNA damage DNA repair Mutagenesis Mitochondrial localization Fluorescence microscopy Functional gene cloning 8-oxoguanine 

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Copyright information

© Humana Press, a part of Springer Science+Business Media, LLC 2008

Authors and Affiliations

  • Michael R. Volkert
    • 1
  • Jen-Yeu Wang
    • 2
  • Nathan A. Elliott
    • 3
  1. 1.Department of Molecular Genetics and MicrobiologyUniversity of Massachusetts Medical SchoolWorcesterUSA
  2. 2.Institute of Molecular Biology, Academica SinicaTaipei
  3. 3.NanoString TechnologiesSeattleUSA

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