RNA-Protein Interaction Protocols pp 357-365

Part of the Methods in Molecular Biology book series (MIMB, volume 488)

Preparation of Efficient Splicing Extracts From Whole Cells, Nuclei, and Cytoplasmic Fractions

  • Naoyuki Kataoka
  • Gideon Dreyfuss


Pre-mRNA (messenger RNA) splicing is an essential step for gene expression in higher eukaryotes. Splicing reactions have been well studied in vitro using extracts prepared from cultured cells. We describe protocols for the preparation of splicing-competent extracts from whole cells, nuclei, and cytoplasmic fractions. The nuclear and whole-cell extracts are fully active in splicing, while S100 extracts are able to support splicing only when SR (Serine/Arginine-rich) proteins are supplied. The simple method described here to prepare splicing active extracts from whole cells is particularly useful in studying pre-mRNA splicing in many different cell types.

Key Words:

Nuclear extracts S100 extracts sonication splicing whole-cell extracts. 

Copyright information

© Humana Press, a part of Springer Science + Business Media, LLC 2008

Authors and Affiliations

  • Naoyuki Kataoka
    • 1
  • Gideon Dreyfuss
    • 2
  1. 1.Tokyo Medical and Dental UniversityMedical Research InstituteTokyoJapan
  2. 2.Howard Hughes Medical Institute and Department of Biochemistry and BiophysicsUniversity of Pennsylvania School of MedicinePennsylvaniaUSA

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