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A Short Primer on the Functional Analysis of Copy Number Variation for Biomedical Scientists

  • Michael R. BarnesEmail author
  • Gerome Breen
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 628)

Abstract

Recent studies have highlighted the potential prevalence of copy number variation (CNV) in mammalian genomes, including the human genome. These studies suggest that CNVs may play a potentially important role in human phenotypic diversity and disease susceptibility. Here, we consider some of the in silico challenges of characterizing genomic structural variants. While the phenotypic impact of the vast majority of CNVs is likely to be neutral, some CNVs will clearly impact phenotype. Here, we review some of the key databases hosting CNV data and discuss some of the caveats in the analysis of CNV data. The task is now to translate some of the initial associations between CNVs and disease into causal variants.

Key words

Genome CNV Deletion Duplication Copy number Bioinformatics Variation CNV 

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Copyright information

© Springer Science+Business Media, LLC 2010

Authors and Affiliations

  1. 1.Medicines Research CentreGlaxoSmithKline Research & Development LimitedStevenageUK
  2. 2.Division of Psychological Medicine and Social, Genetic and Developmental Psychiatry CentreInstitute of Psychiatry, King’s College LondonLondonUK

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