Two-Color In Situ Hybridization of Whole-Mount Mouse Embryos

  • Kristin K. Biris
  • Terry P. Yamaguchi
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1092)

Abstract

RNA in situ hybridization is a powerful technique used to identify the spatial localization of a specific RNA in a tissue section or whole tissue. In this protocol, we describe a reliable method for two-color in situ hybridization that can be used to accurately assess the expression of multiple genes with contrasting or overlapping expression patterns in whole mouse embryos.

Key words

In situ hybridization Development Embryo RNA probe Color detection Antibody 

Notes

Acknowledgements

This research was supported by the Intramural Research Program of the NIH, National Cancer Institute, Center for Cancer Research.

References

  1. 1.
    Wilkinson DG (1992) Whole mount in situ hybridization of vertebrate embryos, in situ hybridization: a practical approach. IRL, OxfordGoogle Scholar
  2. 2.
    Conlon RA, Hermann BG (1993) Detection of messenger RNA by in situ hybridization to postimplantation embryo whole mounts. Methods Enzymol 225:373–783PubMedCrossRefGoogle Scholar
  3. 3.
    Parr BA, Shea MJ, Vassileva G, McMahon AP (1993) Mouse Wnt genes exhibit discrete domains of expression in the early embryonic CNS and limb buds. Development 119:247–261PubMedGoogle Scholar
  4. 4.
    Biris KK, Dunty WC Jr, Yamaguchi TP (2007) Mouse Ripply2 is downstream of Wnt3a and is dynamically expressed during somitogenesis. Dev Dyn 236:3167–3172PubMedCrossRefGoogle Scholar
  5. 5.
    Dunty WC Jr, Biris KK, Chalamalasetty RB, Taketo MM, Lewandoski M, Yamaguchi TP (2008) Wnt3a/beta-catenin signaling controls posterior body development by coordinating mesoderm formation and segmentation. Development 135:85–94PubMedCrossRefGoogle Scholar
  6. 6.
    Nakaya MA, Biris K, Tsukiyama T, Jaime S, Rawls JA, Yamaguchi TP (2005) Wnt3a links left-right determination with segmentation and anteroposterior axis elongation. Development 132:5425–5436PubMedCrossRefGoogle Scholar
  7. 7.
    Kaufman MH (1999) The atlas of mouse development. Academic, LondonGoogle Scholar
  8. 8.
    Hogan B, Beddington R, Costantini F, Lacy E (1994) Manipulating the mouse embryo: a laboratory manual. Cold Spring Harbor Laboratory Press, New YorkGoogle Scholar
  9. 9.
    Collignon J, Varlet I, Robertson EJ (1996) Relationship between asymmetric nodal expression and the direction of embryonic turning. Nature 381:155–158PubMedCrossRefGoogle Scholar
  10. 10.
    Lowe LA, Supp DM, Sampath K, Yokoyama T, Wright CV, Potter SS, Overbeek P, Kuehn MR (1996) Conserved left-right asymmetry of nodal expression and alterations in murine situs inversus. Nature 381:158–161PubMedCrossRefGoogle Scholar
  11. 11.
    Takada S, Stark KL, Shea MJ, Vassileva G, McMahon JA, McMahon AP (1994) Wnt-3a regulates somite and tailbud formation in the mouse embryo. Genes Dev 8:174–189PubMedCrossRefGoogle Scholar
  12. 12.
    Morimoto M, Sasaki N, Oginuma M, Kiso M, Igarashi K, Aizaki K, Kanno J, Saga Y (2007) The negative regulation of Mesp2 by mouse Ripply2 is required to establish the rostro-caudal patterning within a somite. Development 134:1561–1569PubMedCrossRefGoogle Scholar
  13. 13.
    Saga Y, Hata N, Koseki H, Taketo MM (1997) Mesp2: a novel mouse gene expressed in the presegmented mesoderm and essential for segmentation initiation. Genes Dev 11:1827–1839PubMedCrossRefGoogle Scholar
  14. 14.
    Mansouri A, Yokota Y, Wehr R, Copeland NG, Jenkins NA, Gruss P (1997) Paired-related murine homeobox gene expressed in the developing sclerotome, kidney, and nervous system. Dev Dyn 210:53–65PubMedCrossRefGoogle Scholar
  15. 15.
    Neidhardt LM, Kispert A, Herrmann BG (1997) A mouse gene of the paired-related homeobox class expressed in the caudal somite compartment and in the developing vertebral column, kidney and nervous system. Dev Genes Evol 207:330–339CrossRefGoogle Scholar
  16. 16.
    Leitges M, Neidhardt L, Haenig B, Herrmann BG, Kispert A (2000) The paired homeobox gene Uncx4.1 specifies pedicles, transverse processes and proximal ribs of the vertebral column. Development 127:2259–2267PubMedGoogle Scholar
  17. 17.
    Kraus F, Haenig B, Kispert A (2001) Cloning and expression analysis of the mouse T-box gene Tbx18. Mech Dev 100:83–86PubMedCrossRefGoogle Scholar

Copyright information

© Springer Science+Business Media, New York 2014

Authors and Affiliations

  • Kristin K. Biris
    • 1
  • Terry P. Yamaguchi
    • 1
  1. 1.Frederick National Lab of Cancer Research, NCI, NIHFrederickUSA

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