Bioinformatics for DNA Sequence Analysis pp 243-261

Part of the Methods in Molecular Biology book series (MIMB, volume 537) | Cite as

Computational Gene Annotation in New Genome Assemblies Using GeneID

  • Enrique Blanco
  • Josep F. Abril

Abstract

The sequence of many eukaryotic genomes is nowadays available from a personal computer to any researcher in the world-wide scientific community. However, the sequences are worthless without the adequate annotation of the biological meaningful elements. The annotation of the genes, in particular, is a challenging task that can not be tackled without the aid of specific bioinformatics tools. We present in this chapter a simple protocol mainly based on the combination of the program GeneID and other computational tools to annotate the location of a gene, which was previously annotated in D. melanogaster, in the recently assembled genome of D. yakuba.

Key words

Gene finding gene protein genome exon intron sequence alignment annotation pipeline 

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Copyright information

© Humana Press, a part of Springer Science+Business Media, LLC 2009

Authors and Affiliations

  • Enrique Blanco
    • 1
  • Josep F. Abril
    • 1
  1. 1.Departament de Genètica, Facultat de BiologiaUniversitat de BarcelonaBarcelonaSpain

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