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Protocols for miRNA Target Prediction in Plants

  • Gaurav Sablok
  • Kun Yang
  • Xiaopeng Wen
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1970)

Abstract

Next-generation sequencing has opened up new avenues for the identification of microRNAs (miRNAs) and their corresponding roles in abiotic and biotic stress responses. Recently, a plethora of evidence suggests a canonical action of miRNA–mRNA interactions to regulate plant systems biology at the posttranscriptional level, thus leading to the gain or loss of genetic adaptation in plants. In this chapter, we present a detailed protocol for the identification of miRNA targets using six different prediction tools.

Key words

MicroRNA Target prediction Arabidopsis thaliana TAPIR psRobot psRNATarget TarHunter Cleaveland 

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2019

Authors and Affiliations

  • Gaurav Sablok
    • 1
    • 2
  • Kun Yang
    • 3
  • Xiaopeng Wen
    • 3
  1. 1.Finnish Museum of Natural History (Botany)University of HelsinkiHelsinkiFinland
  2. 2.OEB Research Programme, Department of Biological and Environmental SciencesViikki Plant Science CenterHelsinkiFinland
  3. 3.Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region, Ministry of Education, Institute of Agro-Bioengineering, College of Life SciencesGuizhou UniversityGuiyangChina

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