Abstract
UDP-sugars are important substrates for the synthesis of various cellular glycans and glycoconjugates, many of which play essential roles in the pathobiology of diseases associated with deranged glucose metabolism, such as cancer and type 2 diabetes. Hence, their analysis from cultured cells and especially from tissue samples can give valuable information. This chapter describes a method for UDP-sugar isolation from various sources utilizing ion-pair solid-phase extraction with graphitized carbon cartridges, and their analysis using anion-exchange high-performance liquid chromatography.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Vasconcelos-Dos-Santos A, Oliveira IA, Lucena MC, Mantuano NR, Whelan SA, Dias WB, Todeschini AR (2015) Biosynthetic machinery involved in aberrant glycosylation: promising targets for developing of drugs against cancer. Front Oncol 5:138. https://doi.org/10.3389/fonc.2015.00138
Stanley P (2011) Golgi glycosylation. Cold Spring Harb Perspect Biol 3:a005199. https://doi.org/10.1101/cshperspect.a005199
Sironen RK, Tammi M, Tammi R, Auvinen PK, Anttila M, Kosma MV (2011) Hyaluronan in human malignancies. Exp Cell Res 317:383–391
Ferrer CM, Sodi VL, Reginato MJ (2016) O-GlcNAcylation in cancer biology: linking metabolism and signaling. J Mol Biol 428:3282–3294
Oikari S, Makkonen K, Deen AJ, Tyni I, Kärnä R, Tammi RH, Tammi MI (2016) Hexosamine biosynthesis in keratinocytes: roles of GFAT and GNPDA enzymes in the maintenance of UDP-GlcNAc content and hyaluronan synthesis. Glycobiology 26(7):710–722
Shen DL, Gloster TM, Yuzwa SA, Vocadlo DJ (2012) Insights into O-linked N-acetylglucosamine ([0-9]O-GlcNAc) processing and dynamics through kinetic analysis of O-GlcNAc transferase and O-GlcNAcase activity on protein substrates. J Biol Chem 287:15395–15408
Turley EA, Wood DK, McCarthy JB (2016) Carcinoma cell hyaluronan as a "portable" cancerized prometastatic microenvironment. Cancer Res 76(9):2507–2512
Räbinä J, Mäki M, Savilahti EM, Järvinen N, Penttilä L, Renkonen R (2001) Analysis of nucleotide sugars from cell lysates by ion-pair solid-phase extraction and reversed-phase high-performance liquid chromatography. Glycoconj J 18(10):799–805
Oikari S, Venäläinen T, Tammi M (2014) Borate-aided anion exchange high-performance liquid chromatography of uridine diphosphate-sugars in brain, heart, adipose and liver tissues. Chromatogr A 1323:82–86
Tomiya N, Ailor E, Lawrence SM, Betenbaugh MJ, Lee YC (2001) Determination of nucleotides and sugar nucleotides involved in protein glycosylation by high-performance anion-exchange chromatography: sugar nucleotide contents in cultured insect cells and mammalian cells. Anal Biochem 293(1):129–137
Nakajima K, Kitazume S, Angata T, Fujinawa R, Ohtsubo K, Miyoshi E, Taniguchi N (2010) Simultaneous determination of nucleotide sugars with ion-pair reversed-phase HPLC. Glycobiology 20(7):865–871
Pabst M, Grass J, Fischl R, Léonard R, Jin C, Hinterkörner G, Borth N, Altmann F (2010) Nucleotide and nucleotide sugar analysis by liquid chromatography-electrospray ionization-mass spectrometry on surface-conditioned porous graphitic carbon. Anal Chem 82(23):9782–9788
Pan X, Wilson M, Mirbahai L, McConville C, Arvanitis TN, Griffin JL, Kauppinen RA, Peet AC (2011) In vitro metabonomic study detects increases in UDP-GlcNAc and UDP-GalNAc, as early phase markers of cisplatin treatment response in brain tumor cells. J Proteome Res 10(8):3493–3500
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Oikari, S., Tammi, M.I. (2019). Analysis of UDP-Sugars from Cultured Cells and Small Tissue Samples. In: Vigetti, D., Theocharis, A.D. (eds) The Extracellular Matrix. Methods in Molecular Biology, vol 1952. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-9133-4_7
Download citation
DOI: https://doi.org/10.1007/978-1-4939-9133-4_7
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-9132-7
Online ISBN: 978-1-4939-9133-4
eBook Packages: Springer Protocols