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NAMS: Noncoding Assessment of long RNAs in Magnoliophyta Species

  • Gaurav Sablok
  • Kun Sun
  • Hao SunEmail author
Part of the Methods in Molecular Biology book series (MIMB, volume 1933)

Abstract

Regulation of plant transcriptional machinery has been recently demonstrated to be widely regulated by a class of long noncoding RNAs (lncRNAs) with size larger than 200 nt. The lncRNAs have been demonstrated to play key roles in abiotic stress. Taking into account the rapid pace in the development of the sequencing technologies, accelerated identification of lncRNAs with potential involvement in regulating the gene expression has been witnessed. Although progress has been made to identify the lncRNAs, however, accurate classification of the lncRNAs particularly in the case of plants is still challenging. In this protocol chapter, we present NAMS, which provides large-scale noncoding assessment of the lncRNAs specifically designed for Magnoliophyta species. We describe the approach and the usage of NAMS with potential applications for the lncRNA discovery.

Key words

Noncoding assessment lncRNAs Magnoliophyta 

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2019

Authors and Affiliations

  1. 1.Department of Biodiversity and Molecular EcologyResearch and Innovation CentreTrentoItaly
  2. 2.Department of Chemical PathologyThe Chinese University of Hong KongShatinChina
  3. 3.Li Ka Shing Institute of Health SciencesThe Chinese University of Hong KongShatinChina

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