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High-Throughput In Vitro Screening for Inhibitors of Cereal α-Glucosidase

  • Michael D. Rugen
  • Martin Rejzek
  • Henrik Naested
  • Birte Svensson
  • Robert A. Field
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1795)

Abstract

The hydrolysis of starch is a key step in plant germination, which also has relevance in the malting and brewing processes for beer and spirit production. Gaps in knowledge about this metabolic process exist that cannot easily be addressed using traditional genetic techniques, due to functional redundancy in many of the enzyme activities required for alpha-glucan metabolism in cereal crop species. Chemical inhibitors provide opportunities to probe the role of carbohydrate-active enzymes and the phenotypes associated with inhibition of specific enzymes. Iminosugars are the largest group of carbohydrate-active enzyme inhibitors and represent an underused resource for the dissection of plant carbohydrate metabolism. Herein we report a method for carrying out a reverse chemical genetic screen on α-glucosidase, the enzyme that catalyzes the final step in starch degradation during plant germination, namely the hydrolysis of maltose to release glucose. This chapter outlines the use of a high-throughput screen of small molecules for inhibition of α-glucosidase using a colorimetric assay which involves the substrate p-nitrophenyl α-d-glucopyranoside. Identified inhibitors can be further utilized in phenotypic screens to probe the roles played by amylolytic enzymes. Furthermore this 96-well plate-based method can be adapted to assay exo-glycosidase activities involved in other aspects of carbohydrate metabolism.

Key words

Cereal Germination Barley Starch α-Glucosidase Carbohydrate-active enzyme Chemical screen Enzyme inhibition Iminosugar Deoxynojirimycin 

Notes

Acknowledgments

The authors would like to thank Alison M Smith and Vasilios Andriotis for helpful discussions and advice. This work was supported by a Biotechnology and Biological Sciences Research Council (BBSRC, UK) Institute Strategic Programme Grant (MET) [BB/J004561/1] to the John Innes Centre, a BBSRC-Crop Improvement Research Club (CIRC) grant BB/I017291/1 to A.M.S. and R.A.F, and BBSRC PhD studentship BB/J500069/1 to M.D.R.

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2018

Authors and Affiliations

  • Michael D. Rugen
    • 1
  • Martin Rejzek
    • 1
  • Henrik Naested
    • 2
  • Birte Svensson
    • 2
  • Robert A. Field
    • 1
  1. 1.Department of Biological ChemistryJohn Innes CentreNorwichUK
  2. 2.Enzyme and Protein Chemistry, Department of Biotechnology and BiomedicineTechnical University of DenmarkKgs. LyngbyDenmark

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