Compartmentalized Synapse Microarray for High-Throughput Screening

Protocol
Part of the Neuromethods book series (NM, volume 103)

Abstract

Dissociated primary neuronal cell culture remains an indispensible approach for neurobiology research in order to investigate basic mechanisms underlying diverse neuronal functions, including synaptogenesis. Synaptic function is affected in many brain diseases and disorders. The bidirectional nature of synaptic signaling and the presence of a multitude of transsynaptic signals make it complicated to study the direct effects of regulatory factors during synapse assembly. Neuron–fibroblast cocultures have proven to be a powerful technique to study several aspects of synaptogenesis; however, they suffer from low throughput and limited quantitative outcome. The development of high-throughput technologies for genetic and chemical screening can be significantly advanced by miniaturization. The recent development in the area of microfabrication and microfluidics has enabled creation of microscale-compartmentalized devices for neurobiology. These devices are cheap, are easy to manufacture, require reduced sample volumes, enable precise control over the cellular microenvironment both spatially and temporally, and permit high-throughput testing. In this chapter, we describe the protocol and methodological considerations for developing synapse microarray that enables ultrasensitive, high-throughput and quantitative screening of small molecules involved in synaptogenesis.

Key words

Compartmentalized assay Synapse microarray Neuron cell culture In vitro models High-throughput screening Synaptogenesis 

References

  1. 1.
    Park JW et al (2006) Microfluidic culture platform for neuroscience research. Nat Protoc 1(4):2128–2136CrossRefPubMedGoogle Scholar
  2. 2.
    Tessier-Lavigne M, Goodman CS (1996) The molecular biology of axon guidance. Science 274(5290):1123–1133CrossRefPubMedGoogle Scholar
  3. 3.
    Nedelec S et al (2012) Concentration-dependent requirement for local protein synthesis in motor neuron subtype-specific response to axon guidance cues. J Neurosci 32(4):1496–1506CrossRefPubMedCentralPubMedGoogle Scholar
  4. 4.
    Nishikimi M, Oishi K, Nakajima K (2013) Axon guidance mechanisms for establishment of callosal connections. Neural Plast 2013:149060PubMedCentralPubMedGoogle Scholar
  5. 5.
    Deck M et al (2013) Pathfinding of corticothalamic axons relies on a rendezvous with thalamic projections. Neuron 77(3):472–484CrossRefPubMedCentralPubMedGoogle Scholar
  6. 6.
    Paola V, Plazas XN (2013) Activity-dependent competition regulates motor neuron axon pathfinding via PlexinA3. Proc Natl Acad Sci U S A 110:1524CrossRefGoogle Scholar
  7. 7.
    Leung LC et al (2013) Coupling of NF-protocadherin signaling to axon guidance by cue-induced translation. Nat Neurosci 16(2):166–173CrossRefPubMedCentralPubMedGoogle Scholar
  8. 8.
    Wright KM et al (2012) Dystroglycan organizes axon guidance cue localization and axonal pathfinding. Neuron 76(5):931–944CrossRefPubMedCentralPubMedGoogle Scholar
  9. 9.
    Duman-Scheel M (2012) Deleted in Colorectal Cancer (DCC) pathfinding: axon guidance gene finally turned tumor suppressor. Curr Drug Targets 13:1445CrossRefPubMedCentralPubMedGoogle Scholar
  10. 10.
    Huettl RE, Haehl T, Huber AB (2012) Fasciculation and guidance of spinal motor axons in the absence of FGFR2 signaling. PLoS One 7(7):e41095CrossRefPubMedCentralPubMedGoogle Scholar
  11. 11.
    McAllister AK (2007) Dynamic aspects of CNS synapse formation. Annu Rev Neurosci 30:425–450CrossRefPubMedCentralPubMedGoogle Scholar
  12. 12.
    Ko J (2009) LRRTM2 functions as a neurexin ligand in promoting excitatory synapse formation. Neuron 64:791CrossRefPubMedCentralPubMedGoogle Scholar
  13. 13.
    Siddiqui TJ et al (2010) LRRTMs and neuroligins bind neurexins with a differential code to cooperate in glutamate synapse development. J Neurosci 30(22):7495–7506CrossRefPubMedCentralPubMedGoogle Scholar
  14. 14.
    Bennett SA et al (2013) Using neurolipidomics to identify phospholipid mediators of synaptic (dys)function in Alzheimer’s Disease. Front Physiol 4:168CrossRefPubMedCentralPubMedGoogle Scholar
  15. 15.
    Fletcher TL, De Camilli P, Banker G (1994) Synaptogenesis in hippocampal cultures: evidence indicating that axons and dendrites become competent to form synapses at different stages of neuronal development. J Neurosci 14(11):6695–6706Google Scholar
  16. 16.
    Martin SJ (2000) Synaptic plasticity and memory: an evaluation of the hypothesis. Annu Rev Neurosci 23:649CrossRefPubMedGoogle Scholar
  17. 17.
    Hashimoto T et al (2013) Plasticity-related gene 1 is important for survival of neurons derived from rat neural stem cells. J Neurosci Res 91:1402CrossRefPubMedGoogle Scholar
  18. 18.
    Udupa K, Chen R (2013) Motor cortical plasticity in Parkinson’s disease. Front Neurol 4:128PubMedCentralPubMedGoogle Scholar
  19. 19.
    Barth AL, Kuhlman SJ (2013) The many layers of specification and plasticity in the neocortex. Neuron 79(5):829–831CrossRefPubMedGoogle Scholar
  20. 20.
    Boulland JL et al (2013) A neonatal mouse spinal cord injury model for assessing post-injury adaptive plasticity and human stem cell integration. PLoS One 8(8):e71701CrossRefPubMedCentralPubMedGoogle Scholar
  21. 21.
    Shiga S (2013) Photoperiodic plasticity in circadian clock neurons in insects. Front Physiol 4:69CrossRefPubMedCentralPubMedGoogle Scholar
  22. 22.
    Lignani G et al (2013) Long-term optical stimulation of channelrhodopsin-expressing neurons to study network plasticity. Front Mol Neurosci 6:22CrossRefPubMedCentralPubMedGoogle Scholar
  23. 23.
    Judas M, Sedmak G, Kostovic I (2013) The significance of the subplate for evolution and developmental plasticity of the human brain. Front Hum Neurosci 7:423CrossRefPubMedCentralPubMedGoogle Scholar
  24. 24.
    Li Z, Sheng M (2003) Some assembly required: the development of neuronal synapses. Nat Rev Mol Cell Biol 4(11):833–841CrossRefPubMedGoogle Scholar
  25. 25.
    Waites CL, Craig AM, Garner CC (2005) Mechanisms of vertebrate synaptogenesis. Annu Rev Neurosci 28:251–274CrossRefPubMedGoogle Scholar
  26. 26.
    Shen K, Scheiffele P (2010) Genetics and cell biology of building specific synaptic connectivity. Annu Rev Neurosci 33:473CrossRefPubMedCentralPubMedGoogle Scholar
  27. 27.
    Pautot S et al (2005) Neuronal synapse interaction reconstituted between live cells and supported lipid bilayers. Nat Chem Biol 1(5):283–289CrossRefPubMedCentralPubMedGoogle Scholar
  28. 28.
    Scheiffele P et al (2000) Neuroligin expressed in nonneuronal cells triggers presynaptic development in contacting axons. Cell 101(6):657–669CrossRefPubMedGoogle Scholar
  29. 29.
    Biederer T et al (2002) SynCAM, a synaptic adhesion molecule that drives synapse assembly. Science 297(5586):1525–1531CrossRefPubMedGoogle Scholar
  30. 30.
    Kim S et al (2006) NGL family PSD-95-interacting adhesion molecules regulate excitatory synapse formation. Nat Neurosci 9(10):1294–1301CrossRefPubMedGoogle Scholar
  31. 31.
    Linhoff MW et al (2009) An unbiased expression screen for synaptogenic proteins identifies the LRRTM protein family as synaptic organizers. Neuron 61(5):734–749CrossRefPubMedCentralPubMedGoogle Scholar
  32. 32.
    Kalashnikova E et al (2010) SynDIG1: an activity-regulated, AMPA-receptor-interacting transmembrane protein that regulates excitatory synapse development. Neuron 65(1):80–93CrossRefPubMedCentralPubMedGoogle Scholar
  33. 33.
    Lu B, Pang PT, Woo NH (2005) The yin and yang of neurotrophin action. Nat Rev Neurosci 6(8):603–614CrossRefPubMedGoogle Scholar
  34. 34.
    Gospodarowicz D et al (1987) Structural characterization and biological functions of fibroblast growth factor. Endocr Rev 8(2):95–114CrossRefPubMedGoogle Scholar
  35. 35.
    Taylor AM et al (2003) Microfluidic multicompartment device for neuroscience research. Langmuir 19(5):1551–1556CrossRefPubMedCentralPubMedGoogle Scholar
  36. 36.
    Millet LJ et al (2010) Guiding neuron development with planar surface gradients of substrate cues deposited using microfluidic devices. Lab Chip 10(12):1525–1535CrossRefPubMedCentralPubMedGoogle Scholar
  37. 37.
    Taylor AM et al (2010) Microfluidic local perfusion chambers for the visualization and manipulation of synapses. Neuron 66(1):57–68CrossRefPubMedCentralPubMedGoogle Scholar
  38. 38.
    Dworak BJ, Wheeler BC (2009) Novel MEA platform with PDMS microtunnels enables the detection of action potential propagation from isolated axons in culture. Lab Chip 9(3):404–410CrossRefPubMedCentralPubMedGoogle Scholar
  39. 39.
    Pan L et al (2011) Propagation of action potential activity in a predefined microtunnel neural network. J Neural Eng 8(4):046031CrossRefPubMedCentralPubMedGoogle Scholar
  40. 40.
    Park J et al (2012) Multi-compartment neuron–glia co-culture platform for localized CNS axon–glia interaction study. Lab Chip 12(18):3296–3304CrossRefPubMedCentralPubMedGoogle Scholar
  41. 41.
    Hosmane S et al (2010) Circular compartmentalized microfluidic platform: study of axon–glia interactions. Lab Chip 10(6):741–747CrossRefPubMedGoogle Scholar
  42. 42.
    Park JW et al (2009) Novel microfluidic platform for culturing neurons: culturing and biochemical analysis of neuronal components. Biotechnol J 4(11):1573–1577CrossRefPubMedGoogle Scholar
  43. 43.
    Shi P et al (2011) Synapse microarray identification of small molecules that enhance synaptogenesis. Nat Commun 2:510CrossRefPubMedCentralPubMedGoogle Scholar

Copyright information

© Springer Science+Business Media New York 2015

Authors and Affiliations

  1. 1.Department of Mechanical and Biomedical EngineeringCity University of Hong KongHong Kong SARChina

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