Salmonella pp 237-287 | Cite as

Salmonella Phages and Prophages: Genomics, Taxonomy, and Applied Aspects

  • Andrea I. Moreno Switt
  • Alexander Sulakvelidze
  • Martin Wiedmann
  • Andrew M. Kropinski
  • David S. Wishart
  • Cornelis Poppe
  • Yongjie Liang
Protocol
First Online:
Part of the Methods in Molecular Biology book series (MIMB, volume 1225)

Abstract

Since this book was originally published in 2007 there has been a significant increase in the number of Salmonella bacteriophages, particularly lytic virus, and Salmonella strains which have been fully sequenced. In addition, new insights into phage taxonomy have resulted in new phage genera, some of which have been recognized by the International Committee of Taxonomy of Viruses (ICTV). The properties of each of these genera are discussed, along with the role of phage as agents of genetic exchange, as therapeutic agents, and their involvement in phage typing.

Key words

Bacteriophage Temperate Lytic Prophage Genome analysis Genetic map Genome evolution Autographivirinae Chilikevirus Epsilon15likevirus Felixounalikevirus Jerseylikevirus Lambdoid phages Myoviridae P2likevirus P22likevirus Phieco32likevirus Podoviridae Siphoviridae Sp03likevirus Sp058likevirus Sp06likevirus Sp6likevirus T5likevirus T7likevirus V5likevirus Viunalikevirus 
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Notes

Acknowledgements

A.M.K. would like to thank the Laboratory for Foodborne Zoonoses and Health Canada’s Genomic Research and Development Initiative for funding this research. Work on Salmonella phages by A.I.M.S. and M.W. was supported through a USDA-NIFA Special Research Grant to M.W. (2009-34459-19750).

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Copyright information

© Springer Science+Business Media New York 2015

Authors and Affiliations

  • Andrea I. Moreno Switt
    • 8
  • Alexander Sulakvelidze
    • 2
  • Martin Wiedmann
    • 1
  • Andrew M. Kropinski
    • 3
    • 4
    • 5
  • David S. Wishart
    • 6
    • 7
  • Cornelis Poppe
    • 3
  • Yongjie Liang
    • 6
    • 7
  1. 1.Department of Food Science, College of Agriculture and Life SciencesCornell UniversityIthacaUSA
  2. 2.Intralytix, Inc.BaltimoreUSA
  3. 3.Public Health Agency of CanadaLaboratory for Foodborne ZoonosesGuelphCanada
  4. 4.Departments of Molecular and Cellular BiologyUniversity of GuelphGuelphCanada
  5. 5.Departments of PathobiologyUniversity of GuelphGuelphCanada
  6. 6.Department of Biological SciencesUniversity of AlbertaEdmontonCanada
  7. 7.Department of Computing ScienceUniversity of AlbertaEdmontonCanada
  8. 8.Facultad de Ecología y Recursos NaturalesUniversidad Andres Bello, Escuela de Medicina VeterinariaSantiagoChile

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